Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0448
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    29   3.8  
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = -1

Query: 361 SYDSRPFPWVV-TLYVC*CAANVPRLLHGT-LRACASHTNGANVLNLLPT---ISQGPSP 197
           +Y+  P PW++ TL +   A N+  LL  + L    + T+    L  +     I QG S 
Sbjct: 23  AYNMVPHPWILETLNMTGIAPNIQLLLRNSMLNWKTTLTSSGQTLGEVKKQRGIFQGDSL 82

Query: 196 SAHLRCLCIVPLS 158
           S  L  +C++PLS
Sbjct: 83  SPLLFVICLIPLS 95


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 288 SCTEH*GHAPLTQTAPTFSIFSPPYRRDLHQ 196
           SCTE+   +P    +PT ++  PP+ +   Q
Sbjct: 114 SCTENLARSPCAPVSPTMNLLRPPFNQPRRQ 144


>SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 344 IPMGSYVVCMLVCGECAATPARNIEGMRLSHKRRQRSQ--SSPHHIAGTFTKCTSEMSLH 171
           I MG   VC++ C    A     I  +R+ H+RR+R Q   S  +   TFT+  S+  L 
Sbjct: 37  IIMGLSCVCVVAC----ALVILQIRSVRIQHRRRRRQQEHQSATNNNTTFTRTLSQDPLE 92

Query: 170 CA 165
            +
Sbjct: 93  AS 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,915,286
Number of Sequences: 59808
Number of extensions: 452191
Number of successful extensions: 861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)