Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0447
         (253 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q96Q91 Cluster: Anion exchange protein 4; n=21; Amniota...    31   4.9  
UniRef50_Q9P2E8 Cluster: E3 ubiquitin-protein ligase MARCH4 prec...    30   8.5  

>UniRef50_Q96Q91 Cluster: Anion exchange protein 4; n=21;
           Amniota|Rep: Anion exchange protein 4 - Homo sapiens
           (Human)
          Length = 983

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 128 RQTMHPRGPDLHSVYDVTLITILSYL 205
           RQ  HPRGP  H+V D+   ++L +L
Sbjct: 611 RQGGHPRGPGCHTVPDIAFFSLLLFL 636


>UniRef50_Q9P2E8 Cluster: E3 ubiquitin-protein ligase MARCH4
           precursor; n=43; Euteleostomi|Rep: E3 ubiquitin-protein
           ligase MARCH4 precursor - Homo sapiens (Human)
          Length = 410

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 89  EITKNP*SSAGPARQTMHPRGPDLHSVYDVTLITILSYLQLNKWR 223
           E    P    GPA+   HP GP  H     T++ ILS+L+ ++ R
Sbjct: 350 ETAGTPAPEQGPAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQR 394


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,561,685
Number of Sequences: 1657284
Number of extensions: 3697003
Number of successful extensions: 5102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5102
length of database: 575,637,011
effective HSP length: 62
effective length of database: 472,885,403
effective search space used: 9930593463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)