Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0447
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   0.50 
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    25   2.0  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    23   4.7  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    23   4.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   8.2  

>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 91  DNKKSLVKCWTGTTDYAPPRARPSFCLRCY 180
           D+   +VK W G  +    +A+PSF L  Y
Sbjct: 314 DSDNEIVKIWYGDEEKICKKAKPSFDLELY 343


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 140 HPRGPDLHSVYDVTLITILSYL-QLNKW 220
           H R   L+SV  VTL T  SYL + N W
Sbjct: 129 HSRLIQLYSVNPVTLETFFSYLRKCNMW 156


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 91  DNKKSLVKCWTGTTDYAPP 147
           D+K  LV+   G+ +YAPP
Sbjct: 272 DSKNHLVQSSCGSQEYAPP 290


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 132 RLCTPEGPTFILST 173
           RLC+PE P+ +++T
Sbjct: 332 RLCSPENPSLLVNT 345


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 91   DNKKSLVKCWTGTTDYAPPRAR 156
            DNK+SLV C      ++ P  R
Sbjct: 1994 DNKQSLVTCQHSDNTFSTPACR 2015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 966,207
Number of Sequences: 5004
Number of extensions: 15930
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)