Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0447
         (253 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0106 - 31682200-31682775                                         27   1.6  
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167...    26   4.8  

>03_06_0106 - 31682200-31682775
          Length = 191

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 115 CWTGTTDYAPPRARPSFCLRCYFNYNI 195
           CWT T  + PPR+   F L   F   +
Sbjct: 127 CWTLTASHPPPRSAAGFALTTPFRVGV 153


>12_01_0222 -
           1675077-1675289,1675476-1675553,1675943-1676002,
           1676103-1676206,1676321-1676479,1676768-1676894,
           1677569-1677736,1677890-1678000,1678090-1678243,
           1678409-1678744,1678854-1679038,1679141-1679239,
           1679376-1679639,1679776-1679952,1680351-1680644,
           1680753-1680920,1681574-1681918,1682002-1682171,
           1682272-1682422,1683296-1683365,1683456-1683640,
           1683999-1684092,1684195-1684313,1684658-1684717,
           1684844-1684930,1685631-1685717,1685905-1686013,
           1686105-1686183,1686350-1686437,1686611-1686675,
           1687570-1687722,1688514-1688620,1688702-1688784,
           1688926-1689016,1689095-1689231,1689612-1689701,
           1689795-1689962,1690366-1690560
          Length = 1809

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 99  KILSQVLDRHDRLCTPEGPTFILSTM 176
           K++S V + H+R+ TP GP   L  +
Sbjct: 464 KLISFVDEAHERIVTPHGPNMPLENV 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,312,094
Number of Sequences: 37544
Number of extensions: 100980
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)