Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0447
         (253 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50716| Best HMM Match : WD40 (HMM E-Value=0)                        27   3.2  
SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)                   26   4.2  
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  

>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 494

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 160 KVGPSGVHSLSCRSST*LRIFCYLMNDYSMVSSA*SNFI 44
           + G   +H + CRS     ++C   +D+ +VS    N I
Sbjct: 174 RCGNHALHKIPCRSENSKGVYCLQYDDHKIVSGLRDNTI 212


>SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 140 HPRGPDLHSVYDVTLITILSYL 205
           HPR  +++  YD+T++ +L  L
Sbjct: 138 HPRASEIYLTYDITVLVVLVVL 159


>SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)
          Length = 90

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 122 PARQTMHPRGPDLHSVYDVTL 184
           P R + H  G DL+S YDV++
Sbjct: 37  PTRGSSHAAGYDLYSAYDVSI 57


>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 105 LSQVLDRHDRLCTPEGPTFIL 167
           LS VL RHD + +P  P F L
Sbjct: 70  LSNVLGRHDNMPSPPPPEFAL 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,259,531
Number of Sequences: 59808
Number of extensions: 123348
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 304358471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)