Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0447
         (253 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62090.2 68418.m07793 expressed protein                             27   2.3  
At5g62090.1 68418.m07792 expressed protein                             27   2.3  
At3g48380.2 68416.m05281 expressed protein                             25   5.3  
At3g48380.1 68416.m05280 expressed protein                             25   5.3  
At2g41950.1 68415.m05190 expressed protein                             25   5.3  
At1g65690.1 68414.m07456 harpin-induced protein-related / HIN1-r...    25   5.3  
At1g68800.1 68414.m07865 TCP family transcription factor, putati...    25   9.2  
At1g22730.1 68414.m02840 MA3 domain-containing protein contains ...    25   9.2  
At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger) fa...    25   9.2  

>At5g62090.2 68418.m07793 expressed protein
          Length = 816

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 52  CFMRLRPYYNHS*DN-KKSLVKCWTG-TTDYAPPRARPSFCLRCYFN 186
           C  RL  Y  H      +S +  W    T+Y  PRA+  +CL  Y N
Sbjct: 292 CARRLMQYLYHQRQRPSESSIVYWRKFVTEYFSPRAKKRWCLSHYDN 338


>At5g62090.1 68418.m07792 expressed protein
          Length = 816

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 52  CFMRLRPYYNHS*DN-KKSLVKCWTG-TTDYAPPRARPSFCLRCYFN 186
           C  RL  Y  H      +S +  W    T+Y  PRA+  +CL  Y N
Sbjct: 292 CARRLMQYLYHQRQRPSESSIVYWRKFVTEYFSPRAKKRWCLSHYDN 338


>At3g48380.2 68416.m05281 expressed protein
          Length = 640

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 55  FMRLRPYYNHS*DNKKSLVKCWTGTTDYAPPRARPSFCLRCYFNYNIIL 201
           F+ L P+Y  S D+KK +   W G       + + SF L   F YN++L
Sbjct: 587 FLILDPHYTGSEDHKKIVNGGWCGWKKAVDSKGK-SFFLHNKF-YNLLL 633


>At3g48380.1 68416.m05280 expressed protein
          Length = 645

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 55  FMRLRPYYNHS*DNKKSLVKCWTGTTDYAPPRARPSFCLRCYFNYNIIL 201
           F+ L P+Y  S D+KK +   W G       + + SF L   F YN++L
Sbjct: 592 FLILDPHYTGSEDHKKIVNGGWCGWKKAVDSKGK-SFFLHNKF-YNLLL 638


>At2g41950.1 68415.m05190 expressed protein
          Length = 266

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 97  KKSLVKCWTGTTDYAPPRARPSFCLRCYF 183
           K   VKCW G   Y P +  P   +  YF
Sbjct: 151 KYDKVKCWQGEMIYVPEKWSPLDAVFLYF 179


>At1g65690.1 68414.m07456 harpin-induced protein-related /
           HIN1-related / harpin-responsive protein-related similar
           to hin1 homolog (GI:13122296) [Arabidopsis thaliana];
           similar to hin1 (GI:22830759) [Nicotiana tabacum];
           contains 1 transmembrane domain;
          Length = 252

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 139 APPRARPSFCLRCY-FNYNIILLTI 210
           APP+ R S C RC+ + +  +LL +
Sbjct: 53  APPKKRRSCCCRCFCYTFCFLLLLV 77


>At1g68800.1 68414.m07865 TCP family transcription factor, putative
           similar to cyc2 protein [Misopates orontium]; residues
           80 to 140 nearly identical to cyc1a protein (nuclear
           flower development gene cycloidea) GB:AAF07239
           [Antirrhinum siculum]
          Length = 317

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 120 DRHDRLCTPEGP 155
           DRH ++CT +GP
Sbjct: 92  DRHSKICTAQGP 103


>At1g22730.1 68414.m02840 MA3 domain-containing protein contains
           Pfam profile PF02847: MA3 domain; low similarity to
           programmed cell death 4 protein [Gallus gallus]
           GI:12958564
          Length = 693

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 96  QKILSQVLDRHDRLCTPEGPTFILSTM 176
           +K++S  +DRHD+    E   F+LST+
Sbjct: 129 KKLVSMAMDRHDK--EKEMAAFLLSTL 153


>At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger)
           family protein similar to MTD2 [Medicago truncatula]
           GI:9294812; contains Pfam profile PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 260

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 115 CWTGTTDYAPPRARPSFCLRCYFNYNI 195
           C    T    P    S C++CY N+N+
Sbjct: 165 CLETCTKMVLPNCCHSMCIKCYRNWNL 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,017,657
Number of Sequences: 28952
Number of extensions: 81669
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 12,070,560
effective HSP length: 62
effective length of database: 10,275,536
effective search space used: 215786256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)