Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0446
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   5.3  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.0  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   7.0  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   7.0  

>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 332 YPLFS*SIKYRCCHKSLDSITST*CVQRYLFTYLLNRATFVHIYVKVV 189
           YPL S ++K+R   K L  + S    Q  +  YL N   F  I   VV
Sbjct: 164 YPLNSKNLKFRNFRKRLTGLLSNFVSQLSIRNYLYNSTVFEDIMSWVV 211


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 146 YCYIPLVLIQLFLRVGQLFMYVLIS*NN*DLF 51
           YC   +++ Q FLR+ +   Y L+  N  D+F
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 389 WLTDTKLYNLVSLLKTNVNK 448
           WLT    + L+SL++TN NK
Sbjct: 133 WLTTDGTHQLLSLMETNFNK 152


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 146 YCYIPLVLIQLFLRVGQLFMYVLIS*NN*DLF 51
           YC   +++ Q FLR+ +   Y L+  N  D+F
Sbjct: 275 YCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,507
Number of Sequences: 5004
Number of extensions: 70272
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)