Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0446
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0656 + 21601782-21601925,21602249-21602460,21602686-216028...    31   1.4  
12_01_0295 + 2235209-2235263,2236182-2236361,2236478-2236567,223...    28   9.6  
11_01_0294 + 2212807-2212876,2213664-2213843,2214505-2214594,221...    28   9.6  

>12_02_0656 +
           21601782-21601925,21602249-21602460,21602686-21602813,
           21602905-21602986,21603308-21603406,21603619-21604054,
           21604280-21604350,21604438-21604523,21604740-21604750
          Length = 422

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 357 LFLLHRDVDMFG*-LILSYIISFHYSKPTLTKYTCVCYIP 473
           L LL   V +FG    +S++ISF YS  T   Y+C  +IP
Sbjct: 42  LVLLDEQVTLFGPDQSISFLISFVYSLLTALTYSCANFIP 81


>12_01_0295 +
           2235209-2235263,2236182-2236361,2236478-2236567,
           2236947-2237131,2237200-2237358,2237437-2237589,
           2237938-2238264
          Length = 382

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 626 FELFSRYSNIALLFEFPLHINM 691
           F+LF +Y ++AL  + P H+NM
Sbjct: 234 FQLFGKYRDMALAVKNPCHLNM 255


>11_01_0294 +
           2212807-2212876,2213664-2213843,2214505-2214594,
           2215054-2215238,2215399-2215521,2215593-2215745,
           2216090-2216416
          Length = 375

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 626 FELFSRYSNIALLFEFPLHINM 691
           F+LF +Y ++AL  + P H+NM
Sbjct: 227 FQLFGKYRDMALAVKNPCHLNM 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,884,930
Number of Sequences: 37544
Number of extensions: 337420
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)