Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0446
         (780 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 29   5.6  
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)          29   5.6  
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    28   9.8  

>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 165  KCYTLTILLYSISFNSIISSGWATVYVCT 79
            K Y++ +   S+   S++ SGW TVY+ T
Sbjct: 974  KRYSMVLTGISVLGKSLVGSGWTTVYLIT 1002


>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
          Length = 646

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 468 CSKRTYTLLTLVLSNETRLYSLVSVNQTYQH 376
           C  RTY      LS + RLY   S  QT QH
Sbjct: 107 CGARTYNKRASTLSTQPRLYQDSSKEQTEQH 137


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 532  IWNCHVQISKNKKTVDPTSFKFP*KSTSDH 621
            +W     ISKN K  DPT  +F  + T ++
Sbjct: 1165 VWEFSEYISKNSKQADPTGLEFHTEKTDEN 1194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,160,071
Number of Sequences: 59808
Number of extensions: 435205
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)