Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0446
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    32   0.53 
Z70211-3|CAA94156.1|  363|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    29   4.9  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    29   4.9  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    28   6.5  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    28   6.5  

>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
 Frame = -1

Query: 429 SNETRLYSLVSVNQTYQHLCV--IKKVLVLGKCLLSXXXXXXXXXXXXXXIGFHY-IHLM 259
           S+ T+    V+V+Q + +L V  IK  ++L   L+                 FHY ++L 
Sbjct: 63  SSVTKSMMTVTVSQIFVNLSVRLIKTAILL---LVQYPQFSWLFVASSVETSFHYTLYLQ 119

Query: 258 -CSKVFIYLFTK*SDLCPYLCESGGTI-YFQPSKCYTLTILLYSISFNSIISSGWATVYV 85
             S V +Y+F +  DL     +S  T+ Y+ PS   +L + + +++FN ++ S    +YV
Sbjct: 120 FTSSVLLYVFLREKDL-----KSSWTLFYYIPSIAVSLFVSVLNVNFNQLLFSFPFYIYV 174

Query: 84  CTHIIKQLRFIYI 46
             ++   +  + I
Sbjct: 175 IFYVAMSVSNVVI 187


>Z70211-3|CAA94156.1|  363|Caenorhabditis elegans Hypothetical
           protein K11E4.3 protein.
          Length = 363

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 753 PIWKLLK*INKGLDFKKKNPNIFICNGNSNNSAIFEYRENN 631
           P W+L       ++ +  NPN+F+ N  +NN  +FE  E N
Sbjct: 115 PKWRLTPGA-LSINSETSNPNVFVHNKRTNNIDVFETNEQN 154


>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 383 YVWLTDTKLYNLVSLLKTNVNKVYVRLLHSK 475
           ++WL DT LYN + ++K + N+   RLLH+K
Sbjct: 62  FIWLPDTTLYNSL-VMKDDENR---RLLHAK 88


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 383 YVWLTDTKLYNLVSLLKTNVNKVYVRLLHSK 475
           ++WL DT LYN + ++K + N+   RLLH+K
Sbjct: 62  FIWLPDTTLYNSL-VMKDDENR---RLLHAK 88


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 383 YVWLTDTKLYNLVSLLKTNVNKVYVRLLHSK 475
           ++WL DT LYN + ++K + N+   RLLH+K
Sbjct: 7   FIWLPDTTLYNSL-VMKDDENR---RLLHAK 33


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 383 YVWLTDTKLYNLVSLLKTNVNKVYVRLLHSK 475
           ++WL DT LYN + ++K + N+   RLLH+K
Sbjct: 104 FIWLPDTTLYNSL-VMKDDENR---RLLHAK 130


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 328 LYFHNQLNIGVVTNHWIPLHPLNVFKGIYLPI 233
           +++HN  + GV  ++  PLH LN+F+    PI
Sbjct: 427 VHWHNWPDHGVPESYMSPLHLLNIFRSHQKPI 458


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 402 LSYIISFHYSKPTLTKYTCV 461
           L+   SFH +KP+ TKY CV
Sbjct: 385 LNLFCSFHENKPSPTKYNCV 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,439,519
Number of Sequences: 27780
Number of extensions: 373601
Number of successful extensions: 775
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)