Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0443
         (655 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    70   6e-14
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    70   6e-14
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    70   6e-14
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    70   6e-14

>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 70.1 bits (164), Expect = 6e-14
 Identities = 31/84 (36%), Positives = 50/84 (59%)
 Frame = +1

Query: 256 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 435
           LQGF + H            LL+ ++  +Y  +    +++ P+P+VS  VVEPYN+ L+ 
Sbjct: 26  LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSI 85

Query: 436 HTTLEHSDCAFMVDNEAIYDICRR 507
           H  +E++D  + +DNEA+YDIC R
Sbjct: 86  HQLVENTDETYCIDNEALYDICFR 109



 Score = 51.2 bits (117), Expect = 3e-08
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +3

Query: 510 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPR 653
           L +  P+Y +LN L+   +S +T  LRF G LN DL +   N+VP+PR
Sbjct: 111 LKVPNPSYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPR 158



 Score = 32.3 bits (70), Expect = 0.014
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 182 HYTIGKEIVDLVLDRIRKLADQC 250
           HYT G E+VD VLD +RK  + C
Sbjct: 1   HYTEGAELVDAVLDVVRKECENC 23


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 70.1 bits (164), Expect = 6e-14
 Identities = 31/84 (36%), Positives = 50/84 (59%)
 Frame = +1

Query: 256 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 435
           LQGF + H            LL+ ++  +Y  +    +++ P+P+VS  VVEPYN+ L+ 
Sbjct: 26  LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSI 85

Query: 436 HTTLEHSDCAFMVDNEAIYDICRR 507
           H  +E++D  + +DNEA+YDIC R
Sbjct: 86  HQLVENTDETYCIDNEALYDICFR 109



 Score = 51.2 bits (117), Expect = 3e-08
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +3

Query: 510 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPR 653
           L +  P+Y +LN L+   +S +T  LRF G LN DL +   N+VP+PR
Sbjct: 111 LKVPNPSYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPR 158



 Score = 32.3 bits (70), Expect = 0.014
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 182 HYTIGKEIVDLVLDRIRKLADQC 250
           HYT G E+VD VLD +RK  + C
Sbjct: 1   HYTEGAELVDAVLDVVRKECENC 23


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 70.1 bits (164), Expect = 6e-14
 Identities = 31/84 (36%), Positives = 50/84 (59%)
 Frame = +1

Query: 256 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 435
           LQGF + H            LL+ ++  +Y  +    +++ P+P+VS  VVEPYN+ L+ 
Sbjct: 26  LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSI 85

Query: 436 HTTLEHSDCAFMVDNEAIYDICRR 507
           H  +E++D  + +DNEA+YDIC R
Sbjct: 86  HQLVENTDETYCIDNEALYDICFR 109



 Score = 51.2 bits (117), Expect = 3e-08
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +3

Query: 510 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPR 653
           L +  P+Y +LN L+   +S +T  LRF G LN DL +   N+VP+PR
Sbjct: 111 LKVPNPSYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPR 158



 Score = 32.3 bits (70), Expect = 0.014
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 182 HYTIGKEIVDLVLDRIRKLADQC 250
           HYT G E+VD VLD +RK  + C
Sbjct: 1   HYTEGAELVDAVLDVVRKECENC 23


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 70.1 bits (164), Expect = 6e-14
 Identities = 31/84 (36%), Positives = 50/84 (59%)
 Frame = +1

Query: 256 LQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTT 435
           LQGF + H            LL+ ++  +Y  +    +++ P+P+VS  VVEPYN+ L+ 
Sbjct: 26  LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSI 85

Query: 436 HTTLEHSDCAFMVDNEAIYDICRR 507
           H  +E++D  + +DNEA+YDIC R
Sbjct: 86  HQLVENTDETYCIDNEALYDICFR 109



 Score = 51.2 bits (117), Expect = 3e-08
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +3

Query: 510 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPR 653
           L +  P+Y +LN L+   +S +T  LRF G LN DL +   N+VP+PR
Sbjct: 111 LKVPNPSYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPR 158



 Score = 32.3 bits (70), Expect = 0.014
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 182 HYTIGKEIVDLVLDRIRKLADQC 250
           HYT G E+VD VLD +RK  + C
Sbjct: 1   HYTEGAELVDAVLDVVRKECENC 23


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,466
Number of Sequences: 2352
Number of extensions: 14055
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)