Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0442
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 27 1.8
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 27 2.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 3.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 4.2
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 26 4.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.6
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 25 7.4
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 9.7
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 25 9.7
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 9.7
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Frame = -2
Query: 663 DNLVFLNRQRSSRHSR--NTDSSGCATESY-IEHKRAPLYRKLAS---PI-DLINNGIHK 505
DNL+ N++ +R ++ +T A +S +EHK + + +K+++ PI DLI N IH+
Sbjct: 171 DNLLRANKRPYARFAQKVSTPIESHANKSVKLEHKNS-IEKKISNVDKPISDLIENDIHE 229
Query: 504 GLV*LSSLSVEANEST 457
L L + ++++ T
Sbjct: 230 SLPALQNPPIQSHSET 245
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 143 NCLRPPELACLVVHLPPPASSFWSTNITVIHFNN*STAAVLQCSFD 6
N L P + +S+F S++ T I N T + L CSFD
Sbjct: 571 NTLPPTSQGATSTTVSSASSNFLSSSCTPIDDTNSVTGSTLSCSFD 616
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 320 YNLDDMSYSLEEAENMDLRENI 385
Y++ D SYS+ E + ++REN+
Sbjct: 1096 YDIHDQSYSVHELHSENMRENV 1117
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 645 NRQRSSRHSRNTDSSGCATESYIEHKRAPLY 553
+R RSSR SR+ S + Y ++ R+P Y
Sbjct: 150 DRDRSSRSSRSRHPSSRSRHRYDDYSRSPPY 180
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 213 NYTSQALPAYNTEPPHIDHLAPLYKVDFVKLKI 311
N + L NT P +HL KVD KLKI
Sbjct: 430 NSDGETLNEINTNNPEREHLIVRLKVDSQKLKI 462
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 395 ITVMCEITFDPGKFDTLCGPLVDSFASTLNDESYTRPLWMPLLIKSIGEAN--FRYNGAR 568
I+++ I+ DT+ L F++TLN Y W L +++ G A +N
Sbjct: 597 ISIIKSISLSDSVVDTIGELLRSQFSNTLNSSCYVLLQW--LKVRNFGGAKHIVYFNKLI 654
Query: 569 LCSMYDSV 592
+ +++DSV
Sbjct: 655 INTIFDSV 662
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 329 DDMSYSLEEAENMDLRENIANLITVMCE 412
DD S+ + E+ +RE + I V+CE
Sbjct: 7 DDFSFEKRKTESQRIREKYPDRIPVICE 34
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 162 DTSKSKLSADAKEWYPAN---YTSQALPAYNTEPPHIDHLAPLYKVDFVKLKIK 314
+T++ KLS+ + W+P++ Y + P Y++ +L L ++ F+ + K
Sbjct: 810 NTNQEKLSSTVRSWFPSHRSEYHDLSFPDYSSRYSFFHYL--LKRISFLPIHQK 861
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.7
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Frame = +2
Query: 305 QDQNPYNLDDMSYSLEEAENMDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLN 484
++++ N D S+ + ++N +EN + + C T D +D + + S L
Sbjct: 72 ENRSKINFDAWSFENDLSDNDMPKENYLKIFSNQCLFTQDVDYWDLIA--YMSSRPPDLE 129
Query: 485 DESYTRPLWMPLL---IKSIGEANF-RYNGARLCSMYDSV 592
+W+ +L + G A +Y G LC + D++
Sbjct: 130 RWMSLMDIWLRILEIDAEENGSALMKKYMGEDLCELQDAI 169
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 479 LNDESYTRPLWMPLLIKSIG 538
+ND YTRPL + L++ +G
Sbjct: 439 INDNHYTRPLVLVLILAGMG 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,636
Number of Sequences: 5004
Number of extensions: 59208
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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