Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0442
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748     30   1.4  
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985...    30   1.9  
11_03_0055 - 9356602-9356709,9357042-9357221                           29   4.4  
08_01_0982 - 9947192-9947474,9948649-9948950                           29   4.4  
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678     28   5.8  
05_06_0018 + 24966721-24968856                                         28   7.6  
01_07_0177 - 41776168-41776314,41776395-41776456,41777029-417771...    28   7.6  

>04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748
          Length = 373

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 398 TVMCEITFDPG-KFDTLCGPLVDSFA-STLNDESYTR 502
           +V+  I  +PG   D  CGPL+DSFA  TLN    T+
Sbjct: 158 SVVLFIVHNPGVSDDEACGPLIDSFAIKTLNPPQRTK 194


>06_01_1159 -
           9852316-9852441,9852743-9852838,9852912-9852977,
           9853091-9853180,9853262-9853373,9853515-9853598,
           9853864-9853940,9854823-9854873,9854924-9855031,
           9855703-9855774,9856952-9857011,9857808-9857876,
           9858005-9858088,9858212-9858295,9859106-9859198,
           9859930-9860030,9861155-9861264,9863058-9863104,
           9863693-9863778,9863940-9864012,9864454-9864540,
           9864650-9865301,9866164-9867182,9867702-9867797
          Length = 1180

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 69  SAPKGRGRGWQMNNQARELRRPKAVSD--EPKVDTSKSKLSADAKEWYPANYTSQALPAY 242
           +A K R  G        ++ + K  +D  + K  +S+SK S+ AKE   +N T++A    
Sbjct: 218 AATKSRKIGVNQEESKSDISKSKKAADSSKEKKTSSRSKKSSKAKESAASNATAKAEICT 277

Query: 243 NTEPPHIDHLAPLY 284
            T       L PLY
Sbjct: 278 MTSVSEQKPLVPLY 291


>11_03_0055 - 9356602-9356709,9357042-9357221
          Length = 95

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
 Frame = -3

Query: 473 KQMNPPRDHTRCQ-TCP---GQRLS 411
           K+ N PRDH++C+  CP   GQRLS
Sbjct: 55  KKKNEPRDHSQCKPECPWSFGQRLS 79


>08_01_0982 - 9947192-9947474,9948649-9948950
          Length = 194

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 57  NGDISAPKGRGRGWQMNNQARELR 128
           NGD+ AP G G+G    N  RE R
Sbjct: 134 NGDLRAPSGGGQGLGSRNTCREAR 157


>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
          Length = 258

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 359 QLLQVNKTCHPNCMDFDLELDEVYLVQRG 273
           ++L V  +C P CM+   +LD++ LV RG
Sbjct: 57  RVLMVLMSCCPICMNLYFDLDDIELVFRG 85


>05_06_0018 + 24966721-24968856
          Length = 711

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 343 IRHVIQ---IVWILILSLTKSTLYRGARWSIWGGSVL 242
           ++HV+Q   ++W++  +  ++  YR A W+ W  +VL
Sbjct: 115 LQHVLQTALVLWLIANATGRNASYRAAIWAFWCLNVL 151


>01_07_0177 -
           41776168-41776314,41776395-41776456,41777029-41777191,
           41777278-41777375,41777911-41777992,41778391-41778512,
           41778645-41778722,41778873-41779026,41779629-41779767,
           41780453-41780820
          Length = 470

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 84  RGRGWQMNNQARELRRPKAVSDEPKV 161
           RG GWQ      E+ RP  ++ +P+V
Sbjct: 56  RGPGWQREKLPAEIPRPSTIAFQPRV 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,672
Number of Sequences: 37544
Number of extensions: 414531
Number of successful extensions: 1117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)