Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0442
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    29   2.6  
SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)             29   4.5  
SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.9  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        28   7.8  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/58 (32%), Positives = 36/58 (62%)
 Frame = +2

Query: 401 VMCEITFDPGKFDTLCGPLVDSFASTLNDESYTRPLWMPLLIKSIGEANFRYNGARLC 574
           ++ ++T  PG+F+ L   LV ++ + +N++     +   ++ +SI E+NF Y GARLC
Sbjct: 66  ILDQLTESPGEFENLVEDLVLAWKARVNNDETLNEIASVIMEQSILESNFTYTGARLC 123


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +3

Query: 153 PKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPPHIDHLAPLYKVDFVKLKIKIHTIWM 332
           P   ++ S  S  +    P+  ++ + P+  + P  + HL  L  V  V L   +H + +
Sbjct: 536 PSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSTLVHLVHL--VHLVHLVHLVHLVHL 593

Query: 333 TCLIHLKKL 359
            CLIHL  L
Sbjct: 594 VCLIHLVHL 602


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
 Frame = +3

Query: 45   VKMNNGDISAPKGRGRGWQMNN----QARELRRPKAVS-DEPKVDTSKSKLSADAKEWYP 209
            V +      +P   GR  ++ N    Q  E  RP+A S    K+  S S  SA  + W P
Sbjct: 1369 VSLLKAKTKSPDSPGRSRRVRNNVGQQTAESTRPRAASLRASKMHRSASLPSAMCESWDP 1428

Query: 210  ANYTSQALPAYNTEPPH 260
               T+       T PPH
Sbjct: 1429 KVVTTSLTEDSATSPPH 1445


>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = -3

Query: 377 PVDPCFQLLQVNKTCHPNCMDFDLELDEVYLVQRGEMVYMG 255
           P DPC+   +  K C      +D+++  +Y+      + +G
Sbjct: 137 PGDPCYTAKETTKQCRQYLSVYDIDVSRIYVNYHNHFIMLG 177


>SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)
          Length = 466

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 651 FLNRQRSSRHSRNTDSSGCATESYIEHKRAPLYRKLASPIDLINNGIH--KGLV*LSSLS 478
           F   +R  R+       GC++     + R+ +++ L SPI  I   I+   GL+ L SL+
Sbjct: 136 FFELERCPRNGDRKKEKGCSSSRRTRNLRSRIWQSLESPISPIEKLINALSGLMILFSLA 195

Query: 477 V 475
           V
Sbjct: 196 V 196


>SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 57  NGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKV 161
           NG ++  +   RG + NN+    RRP+ +++E +V
Sbjct: 282 NGVLNVVRRPRRGEEQNNEEERSRRPRVLTEEQRV 316


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 48  KMNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKS 176
           K     I   KGRGRG  +  +A+E++ P       KVD +K+
Sbjct: 439 KQTESGIHFGKGRGRGSALREKAKEIKNPG--EKLQKVDVTKT 479


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 126 RRPKAVSDEPKVDTSKSK----LSADAKEWYPANY 218
           R+P+A+S +PK+ TS S+    +S +   W P  Y
Sbjct: 316 RKPRAISWQPKLATSASRTPTVVSKEVAVWNPVEY 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,445,056
Number of Sequences: 59808
Number of extensions: 463428
Number of successful extensions: 1151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)