Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0442
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    29   2.8  
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    29   2.8  
At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containi...    29   3.6  
At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger) fa...    28   4.8  
At3g62130.1 68416.m06981 epimerase-related contains weak similar...    28   4.8  
At2g27200.1 68415.m03269 GTP-binding family protein contains Pfa...    28   4.8  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    28   6.4  
At5g24800.1 68418.m02928 bZIP transcription factor family protei...    27   8.4  
At2g44470.1 68415.m05529 glycosyl hydrolase family 1 protein con...    27   8.4  

>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 42  IVKMNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVD 164
           ++  ++G I APK RGR  ++NN A   ++ K +  + +VD
Sbjct: 186 LISSSHGGIPAPKKRGRKTKINNDAAVAKKRK-IERKEEVD 225


>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 417 PLTRASLTPCVVPWWIHLLQHLMMKAIPDPCG 512
           P    S  P +VP W  L  H ++++IPD  G
Sbjct: 265 PANPMSTPPHIVPEWYFLPIHAILRSIPDKAG 296


>At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 773

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/98 (21%), Positives = 45/98 (45%)
 Frame = +2

Query: 320 YNLDDMSYSLEEAENMDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLNDESYT 499
           ++ +D+ ++  +++N +L E +   + VM +    P  +D+    +    +  L  +   
Sbjct: 334 WSFNDVIHACGQSKNSELAEQLMLQLKVMQQQNLKP--YDSTLATVAAYCSKALQVDLAE 391

Query: 500 RPLWMPLLIKSIGEANFRYNGARLCSMYDSVAQPEESV 613
                  L+  I E ++ Y    L + YDS+ QPE +V
Sbjct: 392 H------LLDQISECSYSYPFNNLLAAYDSLDQPERAV 423


>At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger)
           family protein similar to SP:O54965 RING finger protein
           13 {Mus musculus} RING zinc finger protein
          Length = 234

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 257 PYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAE--NMDLRENIA-NLITVMCEITFDP 427
           PY  S  S  G      + N ++LD++   +EE E  N  + E +    I+ +  I F P
Sbjct: 122 PYNDSPHSFSGYEHLEDESNQHSLDEIIERIEERERGNTSVGEGLTEGQISQLPTIKFKP 181

Query: 428 GKFDTLC 448
              D +C
Sbjct: 182 SLEDKMC 188


>At3g62130.1 68416.m06981 epimerase-related contains weak similarity
           to isopenicillin N epimerase (Swiss-Prot:P18549)
           [Streptomyces clavuligerus]
          Length = 454

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 615 NTDSSGCATESYIEHKRAPLYRKLASPIDLINNGIHKGLV 496
           N  S GC   S +E +R    R L  P +   NG+ +GL+
Sbjct: 48  NNGSFGCCPGSVLEAQREWQLRYLRQPDEFYFNGLRRGLL 87


>At2g27200.1 68415.m03269 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 537

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 159 VDTSKSKLSADAKEWYPANYTSQALPAYNTEPPHIDHLAPLYKVD 293
           +DT  S     AKEW       +AL A + + P   H  P   V+
Sbjct: 76  MDTGSSSSGITAKEWKEQRMREEALHASSLQVPRRPHWTPKMNVE 120


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 449 HTRCQTCPGQRLSHT*QLSSLLCSPVDP--CFQLLQVNKTCHPNCMDFDLELDEVY 288
           H RCQTC G+      +   ++   + P    QL+ +N      C   D +L+EV+
Sbjct: 462 HIRCQTCNGENHGEYEKAPVVIKHTLHPKHSLQLVLLNGDTTRECYCCDKDLEEVF 517


>At5g24800.1 68418.m02928 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H2
           GI:10954096
          Length = 277

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 389 LLCSPVDPCFQLLQVNKTC 333
           L  SP+DPCF L+  + TC
Sbjct: 24  LTTSPLDPCFDLMNRDYTC 42


>At2g44470.1 68415.m05529 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 451

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 153 PKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPPHIDHLAPLYKVD 293
           P     +SK+  ++ ++   NY S    A+    PHIDH  P ++ D
Sbjct: 319 PAFTPEQSKMLINSSDFIGVNYYSIHFTAHL---PHIDHTRPRFRTD 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,883,535
Number of Sequences: 28952
Number of extensions: 321202
Number of successful extensions: 826
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)