Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0441
         (498 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   3.6  
UniRef50_A4W9J3 Cluster: Pyridine nucleotide-disulphide oxidored...    33   4.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 157 WYLPVRTRKYSYHQYR*LIC 98
           WYLP RT K SYH+Y+   C
Sbjct: 572 WYLPARTHKRSYHRYQCSYC 591


>UniRef50_A4W9J3 Cluster: Pyridine nucleotide-disulphide
           oxidoreductase dimerisation region; n=1; Enterobacter
           sp. 638|Rep: Pyridine nucleotide-disulphide
           oxidoreductase dimerisation region - Enterobacter sp.
           638
          Length = 214

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
 Frame = +3

Query: 63  PLFFIYFTMLLLHINYL----YWW*EYLRVLTGRYHPAYFCF-EAKTRFGLKNSCLQV-G 224
           PLF  +   LL  +  L    YWW   L +L     PA   F  A    G   S   +  
Sbjct: 131 PLFPFFLVNLLSGLTALGVRRYWWISQLAML-----PATVIFLNAGRELGKLTSLRDILS 185

Query: 225 DG-IYAVDVYGSLPLNTRWAASAFIHLSY 308
            G ++A+ + G LPL TRW  S + H S+
Sbjct: 186 PGMLFALTLLGLLPLVTRWLFSRYFHSSH 214


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,278,000
Number of Sequences: 1657284
Number of extensions: 9626353
Number of successful extensions: 18160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18156
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)