Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0441
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    26   2.7  
SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr ...    26   2.7  
SPAC1687.07 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   8.4  

>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 300 NG*TRSRPTWC*VVTIHRHLQHKCRHPPGD 211
           NG T S P  C +  +H   +H  R+P GD
Sbjct: 48  NGPTTSFPESCAIKQVHLLQRHGSRNPTGD 77


>SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 79

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 261 PLNTRWAASAFIHLSYKKYITSFCLDAFYLPECINI 368
           P N RW A  F+H  ++K  T    D FY+   + +
Sbjct: 27  PYNERWMA--FVHQEFRKNQTISKRDFFYIEHLLRV 60


>SPAC1687.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +3

Query: 150 RYHPAYFCFEAKTRFGLKNSCLQVGDGIYAVDVYGSL 260
           RY P    FEA    GL +S   +   I A D    L
Sbjct: 37  RYSPVENSFEADFNNGLNSSSFDIAQNILAQDTRAGL 73


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 136 RKYSYHQYR*LICNSSIVKYIKNSGFGFDAALGVH 32
           RK+  H+ R +        YI+ +  G D ALGVH
Sbjct: 130 RKFVAHENRWVPDQRGYSLYIRPTFIGTDEALGVH 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,294
Number of Sequences: 5004
Number of extensions: 41656
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)