Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0441
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0460 - 8654283-8654302,8654669-8654847,8654940-8655125,865...    29   2.7  
04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047           28   3.6  
07_01_0574 + 4252087-4253973                                           27   6.3  
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990...    27   8.4  

>03_02_0460 -
           8654283-8654302,8654669-8654847,8654940-8655125,
           8655626-8655781,8656223-8656431,8657254-8657358
          Length = 284

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 57  PNPLFFIYFTMLL-LHINYLYWW 122
           P  L++I+ TMLL L + ++YWW
Sbjct: 233 PTTLYYIFNTMLLTLLVFHIYWW 255


>04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047
          Length = 377

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +3

Query: 135 RVLTGRYHPAYFCFEAKTRFGLKNSCLQVGDGIYAVDVYGSLPLNTRWAASAFIHLSYKK 314
           RVL G    AY   ++   F L    LQ GD  + + ++        WA    +HL  ++
Sbjct: 91  RVLRGLLWLAYLSADSVAVFVLGRLTLQTGDPRHQLTIF--------WAPFLLLHLGGQE 142

Query: 315 YITSFCLD--AFYLPECINIITHLMIPI 392
            I++F ++  A +    +N++T   + I
Sbjct: 143 TISAFSMEDSALWKRHVLNLLTQSTLAI 170


>07_01_0574 + 4252087-4253973
          Length = 628

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 258 LPLNTRWAASAFIHLSYKKYITSFCLD--AFYLPECINIITHLMIPI 392
           LPL+  WA    IHL  +  IT+F ++    +L   +N++  +++ +
Sbjct: 78  LPLSFFWAPFFLIHLGGQDTITAFAMEDNDLWLRHFLNLVVQVVLAV 124


>04_03_0212 +
           12697854-12698549,12698655-12698930,12698991-12699038,
           12699659-12699715,12700965-12701163,12702267-12702373,
           12702586-12702759,12702844-12703083,12703638-12703693,
           12704499-12704622
          Length = 658

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 93  LLHINYLYWW*EYLRV 140
           L H+NYLYW  +YL +
Sbjct: 535 LFHVNYLYWLEKYLGI 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,067,334
Number of Sequences: 37544
Number of extensions: 251583
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)