Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0441
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   6.5  
SB_43616| Best HMM Match : FeS (HMM E-Value=8.7)                       27   8.6  

>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 202  RTHVSRWVTAFML*MSMDRYHLTPGGPRARSSI 300
            R  +S+WVT + L  S+D  H      R R+ I
Sbjct: 3642 RQDISQWVTGYYLSYSLDGVHFAVYAQRGRTKI 3674


>SB_43616| Best HMM Match : FeS (HMM E-Value=8.7)
          Length = 90

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 15  NVGSIPWTPRAASKPNPLF 71
           N+G +PW P+A S P   F
Sbjct: 72  NLGGLPWVPKAPSFPGKAF 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,456,518
Number of Sequences: 59808
Number of extensions: 307496
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)