Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0441
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034489-10|CAA22464.2|  272|Caenorhabditis elegans Hypothetical...    30   0.81 
AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical...    29   1.4  
Z82288-4|CAB05321.1|  295|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AL034489-10|CAA22464.2|  272|Caenorhabditis elegans Hypothetical
           protein Y7A5A.3 protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +3

Query: 162 AYFCFEAKTRFGLKNSCLQVGDGIYAVDVYGSLPLNTRWAASAFIHLSYKKYITSFCLDA 341
           A F    + RF     C Q G+  Y ++    +  N +W++  +I+ S+K  I+    D 
Sbjct: 69  AAFYARKQPRFLRVTKCSQTGNAKYIIEEIDKVRTNFQWSSLKWINSSFKSAISE---DV 125

Query: 342 FYLPECINIIT 374
            +     NI T
Sbjct: 126 IFFSNKTNIFT 136


>AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical
           protein F33D11.12 protein.
          Length = 260

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 30  PWTPRAASKPNPLFFIYFTM--LLLHINYLYW 119
           PW      + N  FF+ FTM   LL ++ LYW
Sbjct: 115 PWVNNCVGEGNQKFFVLFTMYIALLSMHALYW 146


>Z82288-4|CAB05321.1|  295|Caenorhabditis elegans Hypothetical
           protein ZK896.6 protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 109 ICTGGRSTCE---FSRVGTILPISALKQKRVSV*RT 207
           ICTG     E   +S + T+LP +A KQK  S+ +T
Sbjct: 167 ICTGAELLLEHRCYSFIPTLLPYAAAKQKCESIGKT 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,538,836
Number of Sequences: 27780
Number of extensions: 230362
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)