Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0441
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14820.1 68415.m01679 phototropic-responsive NPH3 family prot...    27   7.0  
At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:...    27   7.0  
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    27   9.3  

>At2g14820.1 68415.m01679 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 634

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
 Frame = +3

Query: 213 LQVGDGIYAVDVYGSLPLNTRWAASA--------FIHLSYKKYITSFCLDAFYLPECINI 368
           ++ G+ IY +DV+ S  L   W  S         F+ LS    + S C+DA     C+++
Sbjct: 116 VEKGNLIYKIDVFLSSSLFRSWKDSIIVLQTTKPFLPLSEDLKLVSLCIDAIATKACVDV 175


>At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:
           CHX6a and CHX6b were originally 1 gene but were split
           pased on alignments with other family members; may be a
           pseudogene and requires futher investigation; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 824

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 36  TPRAASKPNPLFFIYFTMLLLHINYLYW 119
           TP  A   N   ++Y  +LL +++YLYW
Sbjct: 310 TPEGAPVKN--VYLYIGLLLAYLSYLYW 335


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 219 PGDMSSLNRNAFLLQSRNRQDGTYP*ELASTP 124
           P  + +L +  FL  SRN+ +GT P  L   P
Sbjct: 135 PSTIGNLKKLQFLTLSRNKLNGTIPESLTGLP 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,578
Number of Sequences: 28952
Number of extensions: 210824
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)