Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0440
         (341 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q010K0 Cluster: Chromosome 10 contig 1, DNA sequence; n...    31   5.0  
UniRef50_Q7UWY5 Cluster: Chromosomal replication initiator prote...    30   8.8  
UniRef50_Q9FX68 Cluster: T6J4.5 protein; n=1; Arabidopsis thalia...    30   8.8  

>UniRef50_Q010K0 Cluster: Chromosome 10 contig 1, DNA sequence; n=1;
           Ostreococcus tauri|Rep: Chromosome 10 contig 1, DNA
           sequence - Ostreococcus tauri
          Length = 79

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 121 CGW--S*RRCFERRQQQPKNSAAQARDLQHSSASSALRATIL 2
           CGW  + RRC   +    +N AA+A   + +SASSA R + L
Sbjct: 8   CGWYHTVRRCHTAQDSVRRNCAAKASSQRAASASSATRLSTL 49


>UniRef50_Q7UWY5 Cluster: Chromosomal replication initiator protein
           dnaA; n=1; Pirellula sp.|Rep: Chromosomal replication
           initiator protein dnaA - Rhodopirellula baltica
          Length = 591

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 114 GRDGDALRGDSSSRRIVRLRQETCSTHLPAQHSGLRF 4
           G +GD LRG + +RR+   R  T + +L  QH+G  F
Sbjct: 502 GLEGDGLRGKAQTRRVSEPR--TLAMYLARQHTGSAF 536


>UniRef50_Q9FX68 Cluster: T6J4.5 protein; n=1; Arabidopsis
           thaliana|Rep: T6J4.5 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 302

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 141 HIWCHGAVVGRDGDALRGDSSSRRIVRLRQETCS 40
           H+W HG+   +  ++LRG  SS  I+RL    C+
Sbjct: 119 HMWGHGSQYRKGPESLRGTKSSSSILRLPCYCCA 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,207,477
Number of Sequences: 1657284
Number of extensions: 2919880
Number of successful extensions: 8402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8400
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10275329640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)