Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0440
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     25   3.2  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.2  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    25   4.3  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    24   5.6  

>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 230 DCWRRLLPSILRHDQPHATNYIDAAAPVH 316
           DC +    S L+H   H   Y+DA    H
Sbjct: 71  DCGKHFYVSALKHFVEHKIRYLDAVILTH 99


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 233 CWRRLLPSILR 265
           CW R++PS+LR
Sbjct: 225 CWHRIIPSVLR 235


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 236 WRRLLPSILRHDQPHAT---NYIDAAAPVHYASP 328
           WR+ +  I + + PH T     ID+AA +   SP
Sbjct: 201 WRKTVAKIFKEEYPHLTLKNQLIDSAAMLLVKSP 234


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 275 PHATNYIDAAAPVHYASP 328
           P A N+ +A+AP+  ASP
Sbjct: 53  PTAVNHYNASAPIEVASP 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,272
Number of Sequences: 5004
Number of extensions: 10522
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)