Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0440
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0593 + 20874459-20874575,20875258-20875427,20875597-208756...    27   3.9  
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    26   6.7  
02_02_0405 + 9885202-9885415,9885515-9885861,9885941-9886516,988...    26   8.9  

>12_02_0593 +
           20874459-20874575,20875258-20875427,20875597-20875672,
           20875764-20875894,20876570-20876692,20876780-20876893,
           20877163-20877239,20877405-20877472,20877740-20877861,
           20878041-20878180,20878411-20878603,20878692-20878827
          Length = 488

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = -3

Query: 135 WC--HGAVVGRDGDALRGDSSSRRIVRLRQETCSTHLPAQH 19
           WC  HG VVG   D   G      +V        THLP  H
Sbjct: 25  WCALHGLVVGDRADPRSGTVPGVGLVHAPFSLLPTHLPESH 65


>05_01_0033 +
           220125-220190,220274-224445,224863-224949,225048-225084,
           225296-225356,225666-226918
          Length = 1891

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 29  GR*VLQVSCLSRTILRLLLSPLKASP 106
           G+ V+    + RT+ +L+ SPLKA+P
Sbjct: 328 GKLVIDGETMPRTLFQLVKSPLKANP 353


>02_02_0405 +
          9885202-9885415,9885515-9885861,9885941-9886516,
          9886599-9887003
          Length = 513

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 97 FERRQQQPKNSAAQARDLQHSSASSA 20
          F RR    KNSA   R L H S+SS+
Sbjct: 4  FLRRHSLDKNSAQFHRQLSHDSSSSS 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,840,885
Number of Sequences: 37544
Number of extensions: 95129
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)