Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0440
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039037-6|AAC48230.2|  129|Caenorhabditis elegans Seven tm rece...    27   2.7  
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p...    26   6.1  
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr...    26   6.1  

>AF039037-6|AAC48230.2|  129|Caenorhabditis elegans Seven tm
           receptor protein 121 protein.
          Length = 129

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +2

Query: 233 CWRRLLPSILRHDQP--HATNYI 295
           CWRR+LPS++   +P  H +++I
Sbjct: 105 CWRRVLPSMMSSSRPAKHTSSHI 127


>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
           protein ZK328.7b protein.
          Length = 1098

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 236 WRRLLPSILRHDQPHATN-YIDAAAPVH 316
           WR ++  I+  DQP  +N YI+    VH
Sbjct: 249 WRGVMDCIMNADQPEGSNPYIEVLRTVH 276


>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical
           protein ZK328.7a protein.
          Length = 1332

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 236 WRRLLPSILRHDQPHATN-YIDAAAPVH 316
           WR ++  I+  DQP  +N YI+    VH
Sbjct: 249 WRGVMDCIMNADQPEGSNPYIEVLRTVH 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,121,911
Number of Sequences: 27780
Number of extensions: 63708
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)