Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0440
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   0.58 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   1.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.5  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 0.58
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 117 VGRDGDALRGDSSSRRIVRLRQETCSTHLPAQHSG 13
           + RDG+  +G  S R + R+     S H  + +SG
Sbjct: 4   INRDGEKWKGKMSQRPLARMLALLVSLHRLSIYSG 38


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 97  FERRQQQPKNSAAQARDLQHSSASSALR 14
           F  R+ + KNS    + LQH  +S  L+
Sbjct: 40  FCNRRYRTKNSLTTHKSLQHRGSSGMLK 67


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 38  VLQVSCLSRTILRLLLSPLKASPSRPTTAPWHQI 139
           +  V+C+  T+L +L +P     ++P    + +I
Sbjct: 553 IFTVACVLGTVLIILQAPSLYDTTKPIDIKYSKI 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,006
Number of Sequences: 438
Number of extensions: 558
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)