Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0440
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ...    30   0.35 
At5g44180.1 68418.m05406 homeobox transcription factor, putative...    28   1.4  
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ...    27   3.3  
At5g04590.1 68418.m00458 sulfite reductase / ferredoxin (SIR) id...    25   10.0 
At2g17770.1 68415.m02058 ABA-responsive element binding protein,...    25   10.0 
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi...    25   10.0 
At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family prote...    25   10.0 

>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
           contains Pfam domian PF00096: Zinc finger, C2H2 type
          Length = 302

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 141 HIWCHGAVVGRDGDALRGDSSSRRIVRLRQETCS 40
           H+W HG+   +  ++LRG  SS  I+RL    C+
Sbjct: 119 HMWGHGSQYRKGPESLRGTKSSSSILRLPCYCCA 152


>At5g44180.1 68418.m05406 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7/homeotic
           protein Hox7 (GI:19486)   {Lycopersicon peruvianum};
           similar to GP|4165087| Williams-Beuren syndrome deletion
           transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
           domain and Pfam  PF00046: Homeobox domain
          Length = 1694

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 251 PSILRHDQPHATNYIDAAAPVH 316
           P+++ +D P+  +Y+D AA VH
Sbjct: 280 PNLVEYDSPYQKSYMDTAAQVH 301


>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
           identical to WIP3 protein [Arabidopsis thaliana]
           gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 337

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 141 HIWCHGAVVGRDGDALRGDSSSRRIVRLRQETCS 40
           H+W HG+   +  D+L+G      I+RL    C+
Sbjct: 198 HMWGHGSEFRKGADSLKGTIQPAAILRLPCYCCA 231


>At5g04590.1 68418.m00458 sulfite reductase / ferredoxin (SIR)
           identical to sulfite reductase [Arabidopsis thaliana]
           GI:804953, GI:2584721
          Length = 642

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 263 RHDQPHATNYIDAAAPVH 316
           R+D  H TN++D+  P++
Sbjct: 260 RNDNSHGTNFVDSPEPIY 277


>At2g17770.1 68415.m02058 ABA-responsive element binding protein,
           putative similar to ABA response element binding factor
           [Triticum aestivum] gi|21693583|gb|AAM75354
          Length = 156

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 132 CHGAVVGRDGDALRGDSSSRRIVRLRQETCSTHLPAQ 22
           C G   G+D D  RGD   +R+++ R+    +    Q
Sbjct: 110 CLGKKRGQDSDDTRGDRRYKRMIKNRESAARSRARKQ 146


>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1141

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = -3

Query: 126 GAVVGRDGDAL--RGDSSS 76
           G  VGRDGD+L   GDSSS
Sbjct: 749 GGAVGRDGDSLDNDGDSSS 767


>At1g07720.1 68414.m00832 beta-ketoacyl-CoA synthase family protein
           similar to GB:AAC99312 from [Arabidopsis thaliana]
           (Plant J. (1999) In press)
          Length = 478

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 38  VLQVSCLSRTILRLLLSPLKASPSRPTT 121
           +L V+ L R +L LLL  L++SPS+ +T
Sbjct: 295 ILPVTELLRFMLCLLLKKLRSSPSKGST 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,975,579
Number of Sequences: 28952
Number of extensions: 61549
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)