Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0439
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 176 2e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 103 2e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 1e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 96 5e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 3e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 63 3e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 54 1e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 4e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.091
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 30 0.28
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.37
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.64
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 1.5
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.6
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 2.6
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 3.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.4
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 3.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 176 bits (429), Expect = 2e-45
Identities = 79/88 (89%), Positives = 83/88 (94%)
Frame = +1
Query: 247 QKSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 426
++ ILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 427 QIMFETFNTPAMYVAIQAVLSLYASGRT 510
QI+FETFN PA YVAIQAVLSLYASGRT
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRT 148
Score = 126 bits (305), Expect = 2e-30
Identities = 56/61 (91%), Positives = 60/61 (98%)
Frame = +2
Query: 71 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 250
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 251 R 253
R
Sbjct: 62 R 62
Score = 81.8 bits (193), Expect = 9e-17
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +3
Query: 510 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTRLPHEDPTERG 656
TGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLT + ERG
Sbjct: 149 TGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERG 197
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 656 YSFTTTAEREIVRDI 700
Y+F+TTAEREIVRDI
Sbjct: 198 YTFSTTAEREIVRDI 212
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 103 bits (248), Expect = 2e-23
Identities = 43/85 (50%), Positives = 65/85 (76%)
Frame = +1
Query: 250 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 429
+S+L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 430 IMFETFNTPAMYVAIQAVLSLYASG 504
MFE + +YVAIQAVLSLYA G
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQG 146
Score = 58.0 bits (134), Expect = 1e-09
Identities = 24/39 (61%), Positives = 31/39 (79%)
Frame = +3
Query: 510 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTR 626
+G+V+DSGDGV+H VP+YE L H + RLD+AGRD TR
Sbjct: 149 SGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATR 187
Score = 55.6 bits (128), Expect = 6e-09
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 250
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 251 R 253
R
Sbjct: 62 R 62
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 1e-22
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1
Query: 262 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 441
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 442 TFNTPAMYVAIQAVLSLYAS 501
+FN +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = +3
Query: 501 RSYTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 623
RS TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVT 217
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 89 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 238
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.9 bits (228), Expect = 5e-21
Identities = 42/88 (47%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Frame = +1
Query: 250 KSILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 426
+ +L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 427 QIMFETFNTPAMYVAIQAVLSLYASGRT 510
+ +ET N PA+ ++Q VL+LYAS RT
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASART 153
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +2
Query: 89 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ R
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR 66
Score = 56.0 bits (129), Expect = 5e-09
Identities = 25/50 (50%), Positives = 38/50 (76%)
Frame = +3
Query: 474 PSRALAVRVRSYTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 623
P AL R+ TGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+T
Sbjct: 143 PVLALYASART-TGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.1 bits (164), Expect = 3e-13
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +1
Query: 259 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 438
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 439 ETFNTPAMYVAIQAVLSLYASGR 507
E+ PA Y+A Q + +ASG+
Sbjct: 123 ESLRCPATYLAKQETCAAFASGK 145
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 74 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 175
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.3 bits (147), Expect = 3e-11
Identities = 27/74 (36%), Positives = 44/74 (59%)
Frame = +1
Query: 274 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 453
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 454 PAMYVAIQAVLSLY 495
P++ I + S Y
Sbjct: 145 PSVAYGIDGLFSFY 158
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 89 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 184
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 504 SYTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 611
S +GIVL+ G+ SH +P+ G + R+ G
Sbjct: 164 SSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 54.4 bits (125), Expect = 1e-08
Identities = 22/76 (28%), Positives = 44/76 (57%)
Frame = +1
Query: 283 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 462
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 463 YVAIQAVLSLYASGRT 510
Y+ QAV +A+ ++
Sbjct: 134 YLTKQAVCVAFANSKS 149
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 74 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 244
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 274 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 441
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 442 TFNTPAMYVAIQAVLSLYASG 504
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.091
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 334 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 477
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 516 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 623
+V+DSG +H +P+ + A+ R+D+ G+ LT
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLT 194
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 231 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 70
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 272 YLRVRILFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 153
Y + L + L+ K+PS PY SRP A S TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = -3
Query: 265 GSGYSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 92
G G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 134 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 253
G+ PRA F ++ P H G+++ M KD G+E S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPK 539
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 469 AIQAVLSLYASGRTPVSCWTPATVSPTPCPSTKDTHSP 582
++Q + +TP S TP + T P+T DTH P
Sbjct: 266 SVQQQQKQHQQKKTPQSGSTPQMQNTTSQPTTHDTHPP 303
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 412 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTPVSCWTPATVSPTPCPSTKDTHSPTP 588
RE++ Q+ + P+ Y+ LS Y R+P S P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPY---RSPNSY-------PSLLPSTHSPHSPAP 182
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 653 ALGRIFMR*SCEVATG*VQTQDGVGECVSFVD 558
A G+ F + SC++A+G Q+G + +S V+
Sbjct: 403 AAGKFFSQHSCDLASGNKSAQEGQNQFLSMVE 434
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 234 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 118
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 3.4
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 487 SLYASGRTPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQDYLMKILPSAVLV 663
++Y +T S T AT S T P T + P PS +++ VAT+ Y + P++ +V
Sbjct: 331 TVYEGSQTITS--TLATASGT-VPGTVEVILPGPSTIYSGTVATTITYDVSSTPASTVV 386
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 376 LLTEAPLNPKANREKMTQIMFETFN 450
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 116 TYRSHCLLPTRQLLRRTS*ISEI 48
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,212
Number of Sequences: 5004
Number of extensions: 72498
Number of successful extensions: 237
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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