Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0436
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1DE13 Cluster: Dicer-like protein 1 [Includes: Endorib...    34   3.7  
UniRef50_A0DWW5 Cluster: Chromosome undetermined scaffold_67, wh...    33   4.9  
UniRef50_O97275 Cluster: Putative uncharacterized protein MAL3P5...    33   6.5  
UniRef50_O17998 Cluster: Putative uncharacterized protein; n=2; ...    33   8.6  

>UniRef50_A1DE13 Cluster: Dicer-like protein 1 [Includes:
            Endoribonuclease dcl1 (EC 3.1.26.-); ATP-dependent
            helicase dcl1 (EC 3.6.1.-)]; n=5; Trichocomaceae|Rep:
            Dicer-like protein 1 [Includes: Endoribonuclease dcl1 (EC
            3.1.26.-); ATP-dependent helicase dcl1 (EC 3.6.1.-)] -
            Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
            181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
            3700 / NRRL 181))
          Length = 1538

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 610  NPMSFDYNRY*TNRCLRINKDIIFTAIYKYVYQCNLSRGIRKQSHIYY---CVYAHH*SK 440
            NP   +++ +    CL  NK++  TAI K +Y+   SRG  +  HI+Y       H    
Sbjct: 1113 NPDDDEFDYHVNRMCLICNKNLFNTAIKKQIYRYIRSRGFSR--HIWYPDGLTLLHGKDH 1170

Query: 439  SHAYLSNWKH 410
            S   LS  KH
Sbjct: 1171 SKKLLSEGKH 1180


>UniRef50_A0DWW5 Cluster: Chromosome undetermined scaffold_67, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_67,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 516

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 395 YEECEMFPIR*ICM*FTLMVSVNAIINVTLFSYSSRQI 508
           YE+CE+F I   C+    +V  N I ++  FSYS  +I
Sbjct: 196 YEKCELFQIGLTCLYAASLVETNDIFDLKTFSYSQSKI 233


>UniRef50_O97275 Cluster: Putative uncharacterized protein MAL3P5.4;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            MAL3P5.4 - Plasmodium falciparum (isolate 3D7)
          Length = 1816

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -3

Query: 553  KDIIFTAIYKYVYQCNLSRGIR---KQSHIYYCVYAHH*SKSHAYLSNWKHFTLFVLIK- 386
            K +I   +Y Y Y   L++      K+ +IY   Y++H  K +  + N+K + L  LIK 
Sbjct: 1608 KFLIVDILYNYDYYYTLTKSKLDKLKEYNIYLSYYSNHIKKKNKKILNYKKYALLKLIKK 1667

Query: 385  -GWNF 374
             G+N+
Sbjct: 1668 RGFNY 1672


>UniRef50_O17998 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 312

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 457 RKRNNKCDFVF-----LFLATNYIDKRICRLR*ILYPY*FSNNGSFSIYCNQMTSGCSRV 621
           +K  N C F F     +F   +Y+      L+ IL+PY   +  SFS+  N + SG   +
Sbjct: 55  KKTGNGCTFEFEGRKEIFKNQDYLALFFSHLKTILFPYTIISELSFSLVNNDVESGARTL 114

Query: 622 ELVK 633
           E +K
Sbjct: 115 EAIK 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,325,336
Number of Sequences: 1657284
Number of extensions: 10313819
Number of successful extensions: 19530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19523
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)