Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0436
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.58 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   3.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.1  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   5.4  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 421 SINMHVIYFNGERKRNNKCDFVFLFLATN 507
           +I ++   FNG+RK  N CD    F  ++
Sbjct: 207 NIELYKEIFNGKRKNPNGCDIKATFFVSH 235


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 427 LSNWKHFTLFVLIKGWNFKGY*QPE*FNY 341
           ++ W    L V  +GW+ +GY  PE  +Y
Sbjct: 26  MNQWPGVRLLVT-EGWDEEGYHTPESLHY 53


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 486  NKVTFIIAFTLTIKVNHMHI 427
            N +  +I F LT+K +++HI
Sbjct: 1276 NALFVLIVFLLTLKKDYLHI 1295


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 486  NKVTFIIAFTLTIKVNHMHI 427
            N +  +I F LT+K +++HI
Sbjct: 1276 NALFVLIVFLLTLKKDYLHI 1295


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 338 LVIKLFWL-SITFKIPSFY*YEE 403
           +++ L WL SI F +P+ + +EE
Sbjct: 163 VLVMLAWLLSILFSLPTVFLFEE 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,221
Number of Sequences: 336
Number of extensions: 3000
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)