Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0436
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32278| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)                 29   4.6  
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)                28   6.1  
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   28   8.1  
SB_41393| Best HMM Match : WSC (HMM E-Value=0.06)                      28   8.1  

>SB_32278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 571 GSFSIYCNQMTSGCSRVELVKVYEYFKVQYPGGCTHSA 684
           G++  Y       C+R   VK Y YF +QY G C   A
Sbjct: 68  GNWDKYMEDAVCRCARKASVKSYMYFGLQYYGECWSGA 105


>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
          Length = 755

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 592 NQMTSGCSRVELVKVYEYFKVQYPGGCTHSA 684
           N+  S C+ +   K Y+YF VQ+ G C  S+
Sbjct: 529 NKTISQCAHIARNKEYDYFGVQFYGECWSSS 559


>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
          Length = 220

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 586 YCNQMTSGCSRVELVKVYEYFKVQYPGGC 672
           Y N +   C+R    K Y YF +Q+ G C
Sbjct: 138 YINSLACRCARAAYKKGYTYFGLQFYGEC 166


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 461 NAIINVTLFSYSSRQITLINVFVDCGKYYILIDSQTTV 574
           N + NVT +++ S  +T+I+ +   G Y I ++S  +V
Sbjct: 582 NKLTNVTNWAFPSPGVTVIHTYTAPGNYSISVNSTNSV 619


>SB_41393| Best HMM Match : WSC (HMM E-Value=0.06)
          Length = 361

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 574 SFSIYCNQMTSGCSRVELVKVYEYFKVQYPGGC 672
           ++  Y  ++   C++    K Y YF +QY G C
Sbjct: 224 NWDFYIKRLVCRCAQSAKAKGYHYFAIQYYGVC 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,483,830
Number of Sequences: 59808
Number of extensions: 318656
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)