Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0436
         (684 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113371-1|AAM29376.1| 1237|Drosophila melanogaster LP01827p pro...    29   7.8  
AF364550-1|AAK52060.1|  335|Drosophila melanogaster gag protein ...    29   7.8  
AE014298-2399|AAF48606.2| 1342|Drosophila melanogaster CG4301-PA...    29   7.8  

>AY113371-1|AAM29376.1| 1237|Drosophila melanogaster LP01827p
           protein.
          Length = 1237

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 194 VAYSYVDKASSKVFII*QTKSLIIKTDKFTIFNFLKYYFGNY*LFIYLLVIKLF 355
           V   Y  K  +++F+I +   L   TD +++  FL+ Y     LF YL+ I L+
Sbjct: 225 VTLLYFLKRYNELFVIPKLTYLGDATDSYSVKQFLQDYLSFLILFNYLIPISLY 278


>AF364550-1|AAK52060.1|  335|Drosophila melanogaster gag protein
           protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 202 FIRRQSFIKSVYHLTDKKSHN 264
           F+RR  F+ S+Y  TDK+ H+
Sbjct: 39  FVRRVDFVMSLYPTTDKRQHS 59


>AE014298-2399|AAF48606.2| 1342|Drosophila melanogaster CG4301-PA
           protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 194 VAYSYVDKASSKVFII*QTKSLIIKTDKFTIFNFLKYYFGNY*LFIYLLVIKLF 355
           V   Y  K  +++F+I +   L   TD +++  FL+ Y     LF YL+ I L+
Sbjct: 330 VTLLYFLKRYNELFVIPKLTYLGDATDSYSVKQFLQDYLSFLILFNYLIPISLY 383


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,143,513
Number of Sequences: 53049
Number of extensions: 450900
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)