Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0436
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical
           protein R10E8.1 protein.
          Length = 312

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 457 RKRNNKCDFVF-----LFLATNYIDKRICRLR*ILYPY*FSNNGSFSIYCNQMTSGCSRV 621
           +K  N C F F     +F   +Y+      L+ IL+PY   +  SFS+  N + SG   +
Sbjct: 55  KKTGNGCTFEFEGRKEIFKNQDYLALFFSHLKTILFPYTIISELSFSLVNNDVESGARTL 114

Query: 622 ELVK 633
           E +K
Sbjct: 115 EAIK 118


>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 94  FYNLKKHFQ*FLIVIIKLVNS*QTNKKKYLTVLRCLFIRRQSFIKSVYHLTDKKS 258
           F N++   + FL    K     +++ K Y+T   C+ IRR  F    +H+  +KS
Sbjct: 158 FPNMRSELRGFLETSEKFPTLPKSDNKNYVT---CVHIRRSDFFDVGFHVGSEKS 209


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 194 RKTVKYFFLFVC*LFTSFIITIKNY--WKC 111
           +K  +Y  L +C ++T  IITI+N   W C
Sbjct: 136 KKLFEYILLTICFVWTLIIITIRNLVEWTC 165


>Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical
           protein T13H5.8 protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 102 IIKQLSTSFFSVYQLIFSLLILKKKVSFYGGRGS 1
           I+  + T F S   L+F  L  K  +SF+ GR S
Sbjct: 289 IVLLMVTFFVSTLHLLFDALAFKNDISFWKGRKS 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,494
Number of Sequences: 27780
Number of extensions: 264251
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)