Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0435
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    79   1e-13
UniRef50_Q2BGX5 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_A7QHA1 Cluster: Chromosome chr18 scaffold_96, whole gen...    33   4.9  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 36/43 (83%), Positives = 38/43 (88%)
 Frame = +3

Query: 366  ELPSTVFPERYGISFFKRGLW*VLNDRQRLGSVSGIAEVHGRR 494
            ELPSTVFPERY +SFFKRGLW VL+ RQRLGS  GIAEVHGRR
Sbjct: 944  ELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q2BGX5 Cluster: Putative uncharacterized protein; n=1;
           Neptuniibacter caesariensis|Rep: Putative
           uncharacterized protein - Neptuniibacter caesariensis
          Length = 256

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 389 RALWHILLQTRLVVST*RQAAAWLCLWDC*-SPRATVTTHHRWARMLVCHTGN 544
           + L  +LLQ R+ V     ++A   LWD   S R T+T HH++ R L+  +GN
Sbjct: 165 KQLLRMLLQNRVDVGIIPYSSAQYLLWDNQWSTRFTLTNHHQFTRYLMVRSGN 217


>UniRef50_A7QHA1 Cluster: Chromosome chr18 scaffold_96, whole genome
           shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
           chr18 scaffold_96, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 881

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 123 KTFMSPSILKCDDKVSQLCCMIYLASTTYWLGSGSAVVVS 4
           KT  S  +L   D VS L  + +LA + +W GSGS ++++
Sbjct: 204 KTLCSRKVLIILDDVSALTQLEFLAGSHHWFGSGSRIIIT 243


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,521,477
Number of Sequences: 1657284
Number of extensions: 12897521
Number of successful extensions: 27019
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27012
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)