Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0435
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.7  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   7.7  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -3

Query: 493  RRPWTSAIPETEPSRCLSLSTHHKPRLKKDMP*RSGNTVDGSSCPHLS 350
            +R  TS IP  +P++         PR+K  +P RSG++  G   P+L+
Sbjct: 992  QRSSTSIIP-IKPNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNLT 1038


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 256  SHVVDVATNYKKPIFIIQLAGFTAERDTSYV 164
            S++VD   +YK+P+F + +  F+  R  S+V
Sbjct: 2012 SYIVDALASYKQPVF-VYIPPFSELRGGSWV 2041


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 153 SFSVD*--VLETK-TFMSPSILKCDDKVSQLCCMIYLASTTYW 34
           +FSVD    L TK T  +  +LK  D+    CC IYLAS  +W
Sbjct: 612 NFSVDDYDTLITKCTLYASKLLKKPDQ----CCGIYLASHLWW 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,238
Number of Sequences: 5004
Number of extensions: 55082
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)