Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0435
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_11705| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.8e-17)        28   8.1  
SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_9363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 498 PLTIGGPVCSSATRAIKKRHVDRYHISH 581
           PL++ GP+C  AT A K R +  Y  SH
Sbjct: 13  PLSVTGPLCMEATSAQKNRVLRGYGTSH 40


>SB_11705| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.8e-17)
          Length = 413

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -2

Query: 560 YMSFFYCPC--GRRAYGPTYG-EWLPSPVDFSNPRDRAKPLP 444
           YM F+Y P   G   Y P     +LP     + P+D  KPLP
Sbjct: 265 YMMFYYDPEEEGDSKYDPESSCRYLPDSYPLNYPKDSDKPLP 306


>SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 556 CLFFIARVADEHTGPPMVSGYRRPWTSAIPETEPSRCLSLSTHHKPRL 413
           CL  I           M S + +P+ ++I  TEP  CL+  T   P+L
Sbjct: 45  CLTIITSTDPRPCLTSMTSTHPQPYLTSITTTEPPLCLTSITSTDPQL 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,728,769
Number of Sequences: 59808
Number of extensions: 427667
Number of successful extensions: 947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)