Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0435
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 491 SPVDFSNPRDRAKPLPVVKYSPQASFEEGYAIALGKHRGR 372
           S +  S   D  +P P ++ +PQ S    +    GKH G+
Sbjct: 376 SSISSSEENDFWQPKPTLEDAPQNSLLPNFVGYKGKHIGK 415


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 274  NDRKGQQASSQSEERYRIG 330
            N+R G+QA+SQ +++ + G
Sbjct: 1568 NNRSGEQANSQQQQQQQSG 1586


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 479 SPRATVTTHHRWARMLVCHTGNKKKTCRQVSHLTCV 586
           S R +     R +++++ HT N KKT  ++    CV
Sbjct: 3   SMRLSNVATFRLSKVMLDHTINSKKTIMRILKEVCV 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,875
Number of Sequences: 438
Number of extensions: 4262
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)