Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0435
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA... 30 1.6
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA... 30 1.6
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA... 30 1.6
At2g16300.1 68415.m01866 F-box family protein contains Pfam:PF00... 30 1.6
At1g11530.1 68414.m01324 thioredoxin family protein similar to t... 30 1.6
At2g16290.1 68415.m01865 F-box family protein contains Pfam PF00... 29 2.2
At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00... 28 6.6
At5g64640.1 68418.m08124 pectinesterase family protein contains ... 27 8.8
At5g01180.1 68418.m00022 proton-dependent oligopeptide transport... 27 8.8
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 27 8.8
At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR... 27 8.8
At1g08410.1 68414.m00930 GTP-binding family protein contains Pfa... 27 8.8
>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 209 DKYRFLVISSDIYYMGSHYL*LMTEKGSKLHHNRKNGI 322
DK V S++YY GSH + +M+ G L+H +
Sbjct: 169 DKVYEFVNLSELYYAGSHGMDIMSPAGESLNHEHSRTV 206
>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 384
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 209 DKYRFLVISSDIYYMGSHYL*LMTEKGSKLHHNRKNGI 322
DK V S++YY GSH + +M+ G L+H +
Sbjct: 168 DKVYEFVNLSELYYAGSHGMDIMSPAGESLNHEHSRTV 205
>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 209 DKYRFLVISSDIYYMGSHYL*LMTEKGSKLHHNRKNGI 322
DK V S++YY GSH + +M+ G L+H +
Sbjct: 169 DKVYEFVNLSELYYAGSHGMDIMSPAGESLNHEHSRTV 206
>At2g16300.1 68415.m01866 F-box family protein contains Pfam:PF00646
F-box domain
Length = 322
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 484 WTSAIPETEPSRCLSLSTH 428
W S +P + SRCLS+ TH
Sbjct: 35 WRSVVPPQDQSRCLSIKTH 53
>At1g11530.1 68414.m01324 thioredoxin family protein similar to
thioredoxin H-type from Arabidopsis thaliana SP|P29448,
Nicotiana tabacum SP|Q07090; contains Pfam profile:
PF00085 Thioredoxin
Length = 118
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 310 PIVMKLAALFCH*S*IMRSHVVDVATNYKKPIFII 206
PIV AL+C S M S ++A NYK +F+I
Sbjct: 26 PIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLI 60
>At2g16290.1 68415.m01865 F-box family protein contains Pfam
PF00646: F-box domain;
Length = 415
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 490 RPWTSAIPETEPSRCLSLSTH 428
R W S +P + SRCL + TH
Sbjct: 33 RSWRSVVPPLDHSRCLGIKTH 53
>At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00646
F-box domain
Length = 778
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 484 WTSAIPETEPSRCLSLSTH 428
W S +P + SRCL + TH
Sbjct: 501 WRSVVPPLDHSRCLGIKTH 519
>At5g64640.1 68418.m08124 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 602
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 526 EHTGPPMVSGYRRPWTSAIPE 464
++TGP V R PW+S IPE
Sbjct: 560 KNTGPGSVRSSRVPWSSEIPE 580
>At5g01180.1 68418.m00022 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 570
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 388 GNTVDGSSCPHLSTNSFSLSLFDTV 314
GNT+D P+ S SLSLFDT+
Sbjct: 357 GNTLDQHMGPNFKIPSASLSLFDTL 381
>At4g30990.1 68417.m04398 expressed protein ; expression supported by
MPSS
Length = 2138
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 445 LSLSTHHKPRLKKDMP*RSGNTVDGSSCPHLSTNSFSLSLF 323
+SL K + +D+ SG SCPHL T F+L LF
Sbjct: 1815 VSLPPSKKKKKSRDLKETSGLCFGPKSCPHLIT-VFALDLF 1854
>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1031
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 87 DKVSQLCCMIYLASTTYWLGSGSAVVVS 4
D V+ + + LA+ T W GSGS +VV+
Sbjct: 297 DDVNHIMQLEALANETTWFGSGSRIVVT 324
>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 589
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 463 TEPSRCLSLSTHHKPRLKKDMP*RSGNTVDGSSCP 359
T + S H KP+ KKD R NT DG P
Sbjct: 538 TAKKQTASHKQHKKPQRKKDRTWRVQNTEDGDGMP 572
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,573
Number of Sequences: 28952
Number of extensions: 291106
Number of successful extensions: 649
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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