BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0434 (299 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 23 7.3 SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 23 9.6 SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch... 23 9.6 >SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 441 Score = 23.4 bits (48), Expect = 7.3 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -2 Query: 262 LKL*GCKKNSALAHIFSAVIVIIVMALA 179 LKL G +K + H F ++V I++ +A Sbjct: 104 LKLFGLRKIALTLHFFEPLLVFILLIIA 131 >SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 676 Score = 23.0 bits (47), Expect = 9.6 Identities = 9/26 (34%), Positives = 13/26 (50%) Frame = +2 Query: 104 SIEKASSLIRIILYKAKCHVLYHYTC 181 ++ AS ++R CH LYH C Sbjct: 630 TLNPASMMVRRNYMLTPCHHLYHRQC 655 >SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 257 Score = 23.0 bits (47), Expect = 9.6 Identities = 7/18 (38%), Positives = 13/18 (72%) Frame = +3 Query: 237 FFLHPYNFNFGSYTHYIG 290 F+L Y+F+F ++ Y+G Sbjct: 18 FYLFNYHFDFSNFGFYLG 35 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,165,691 Number of Sequences: 5004 Number of extensions: 19759 Number of successful extensions: 33 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 33 length of database: 2,362,478 effective HSP length: 63 effective length of database: 2,047,226 effective search space used: 73700136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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