Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0434
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    23   7.3  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   9.6  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    23   9.6  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 262 LKL*GCKKNSALAHIFSAVIVIIVMALA 179
           LKL G +K +   H F  ++V I++ +A
Sbjct: 104 LKLFGLRKIALTLHFFEPLLVFILLIIA 131


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 104 SIEKASSLIRIILYKAKCHVLYHYTC 181
           ++  AS ++R       CH LYH  C
Sbjct: 630 TLNPASMMVRRNYMLTPCHHLYHRQC 655


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 237 FFLHPYNFNFGSYTHYIG 290
           F+L  Y+F+F ++  Y+G
Sbjct: 18  FYLFNYHFDFSNFGFYLG 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,691
Number of Sequences: 5004
Number of extensions: 19759
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)