Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0434
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525...    28   1.6  
03_02_0170 + 6119667-6119912,6120032-6120169,6120311-6120421,612...    25   8.3  

>10_02_0096 -
           5248369-5248479,5248562-5248604,5249093-5249178,
           5250089-5250153,5252539-5252747,5253077-5253188,
           5253271-5253322,5254593-5254685,5254997-5255146,
           5255223-5255327,5255858-5255891,5256145-5256281,
           5257691-5257819,5257899-5257977,5258081-5258156,
           5258981-5259070,5259181-5259259,5259397-5259431,
           5260722-5260811,5260913-5261027
          Length = 629

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 62  AHILPDWNRSPMTISIEKASSLIRIILYKAKCHVL 166
           AH   D+ R+P+ I +E     I +  +K KCH++
Sbjct: 432 AHDKQDFERTPLFIRLEAKLRQIILDYWKEKCHLI 466


>03_02_0170 +
           6119667-6119912,6120032-6120169,6120311-6120421,
           6120621-6120828,6120938-6121019,6121239-6121347,
           6122175-6122291,6122378-6122602
          Length = 411

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 218 FLCSHSNHCNGISM 177
           F+CS+S HC+GI M
Sbjct: 363 FVCSNSVHCDGIVM 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,000,594
Number of Sequences: 37544
Number of extensions: 111400
Number of successful extensions: 239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)