Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0434
(299 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52468| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.043
SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_55671| Best HMM Match : Borrelia_rep (HMM E-Value=0.00026) 28 1.2
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_3845| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.15) 27 2.8
SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05) 27 3.7
SB_33653| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_12367| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.054) 27 3.7
SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9) 27 3.7
SB_27379| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.65) 26 4.9
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017) 26 6.5
SB_32588| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
>SB_52468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 33.1 bits (72), Expect = 0.043
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 132 ELYYTRLNV-TCYTITHANAITMITMTAEKICAKAEFFLH 248
E YTRLN + YT+TH NA +M T+T I K +LH
Sbjct: 160 ESTYTRLNAESMYTLTHLNAESMYTLT-HFIFRKGHTYLH 198
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 132 ELYYTRLNV-TCYTITHANAITMITMT 209
E YTRLN + YT+TH NA M T+T
Sbjct: 107 ESTYTRLNAESMYTLTHLNAEKMYTLT 133
>SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +3
Query: 102 YPSRKPAH*LELYYTRLNVTCYTITHANAITMITMTAEKICAKAEFFLHPYN 257
+P P + Y + VT +T + AIT++T+ A+++C +H ++
Sbjct: 141 HPRAIPCRQRVVIYGVVAVTFSIVTVSPAITILTVLADRVCGSRATIVHDFS 192
>SB_55671| Best HMM Match : Borrelia_rep (HMM E-Value=0.00026)
Length = 294
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -3
Query: 156 HLALYSIILISELAFSMDIVIGLLFQSGSICAR*ASDLYMVLGIL 22
HLAL IL+S+LA +DI++ L I SDL ++L IL
Sbjct: 120 HLALLRDILVSDLALLLDILVSDLALLRDIL---VSDLALLLDIL 161
>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1301
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 162 CYTITHANAITMITMTAEKICAKAEFFLHP 251
CY ++ NA +T+T I AK E +HP
Sbjct: 914 CYVLSKTNAGLAVTVTVTVIFAKDEEIVHP 943
>SB_3845| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.15)
Length = 257
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG+ML+EH+
Sbjct: 211 TPYKGRMLHEHV 222
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 31 TPYKGSMLHEHV 42
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 49 TPYKGSMLHEHV 60
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 67 TPYKGSMLHEHV 78
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 103 TPYKGSMLHEHV 114
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 121 TPYKGSMLHEHV 132
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 139 TPYKGSMLHEHV 150
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 157 TPYKGSMLHEHV 168
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 175 TPYKGSMLHEHV 186
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 193 TPYKGSMLHEHV 204
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 229 TPYKGSMLHEHV 240
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML EH+
Sbjct: 85 TPYKGSMLPEHV 96
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 33 TPYKGQMLNEH 65
TPYKG ML+EH
Sbjct: 247 TPYKGSMLHEH 257
>SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)
Length = 444
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +2
Query: 155 CHVLYHYTC*CHYNDYYDCRENMC 226
C + Y C C Y YDC C
Sbjct: 179 CRYVSTYDCYCRYVSTYDCMNGYC 202
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +2
Query: 155 CHVLYHYTC*CHYNDYYDCRENMC 226
C + Y C C Y YDC C
Sbjct: 329 CRYVSTYDCYCRYVSTYDCMNGYC 352
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 143 YKAKCHVLYHYTC*CHYNDYYDC 211
Y C + Y C C Y YDC
Sbjct: 77 YDCYCRYVSTYDCYCRYVSTYDC 99
>SB_33653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 195 MITMTAEKICAKAEFFLHPYNFNFGSY 275
++ T + ICA AEFF+ Y F Y
Sbjct: 294 ILGFTEQLICANAEFFVGSYYSTFSMY 320
>SB_12367| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.054)
Length = 414
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 31 TPYKGSMLHEHV 42
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG ML+EH+
Sbjct: 139 TPYKGSMLHEHV 150
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG M++EH+
Sbjct: 49 TPYKGSMVHEHV 60
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG M++EH+
Sbjct: 67 TPYKGSMVHEHV 78
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 33 TPYKGQMLNEHI 68
TPYKG M++EH+
Sbjct: 85 TPYKGNMVHEHV 96
>SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)
Length = 433
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 34 HHIKVRCLTSTYTTGLE*KSDDNIHRESQLTN*NY 138
H I +C+++T T +E DD+++ + N N+
Sbjct: 146 HRITPKCVSNTTITTVEISDDDDVNNDYDYVNANH 180
>SB_27379| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.65)
Length = 246
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 212 CSHSNHCNGISMCNGIARDI*PCIV*F*LVSWLSRWIL-SSDFYSSPVVYVLVKHL 48
C H++ C+G ++ GI D+ +V L W S ++ S + Y++ + L+K +
Sbjct: 165 CIHTHQCHGFAIPPGITDDLFKRMVDELLYRWNSMYLYPSREKYATVGIGFLIKDI 220
>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
Length = 472
Score = 25.8 bits (54), Expect = 6.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 212 CSHSNHCNGISMCNGIARDI 153
C+ + HC+ +CN +RD+
Sbjct: 252 CTDTKHCDASKLCNQASRDL 271
>SB_32588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 33 TPYKGQMLNEHIYYRTGIEVR*QYP 107
T YKG + YYRT E++ +YP
Sbjct: 405 THYKGSVCQFSQYYRTCYELQLEYP 429
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,608,841
Number of Sequences: 59808
Number of extensions: 147868
Number of successful extensions: 356
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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