Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0434
         (299 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55077-1|CAA38905.1|  591|Homo sapiens alpha-2 macroglobulin rec...    28   6.2  
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    28   6.2  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    28   6.2  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    28   6.2  
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein...    28   6.2  

>X55077-1|CAA38905.1|  591|Homo sapiens alpha-2 macroglobulin
           receptor protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 236 LCLSTYFLCSHSNHC-NGISMCNG 168
           +CL + F C+++N C  GI  CNG
Sbjct: 138 VCLPSQFKCTNTNRCIPGIFRCNG 161


>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 236  LCLSTYFLCSHSNHC-NGISMCNG 168
            +CL + F C+++N C  GI  CNG
Sbjct: 3412 VCLPSQFKCTNTNRCIPGIFRCNG 3435


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 236  LCLSTYFLCSHSNHC-NGISMCNG 168
            +CL + F C+++N C  GI  CNG
Sbjct: 3412 VCLPSQFKCTNTNRCIPGIFRCNG 3435


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 236  LCLSTYFLCSHSNHC-NGISMCNG 168
            +CL + F C+++N C  GI  CNG
Sbjct: 3412 VCLPSQFKCTNTNRCIPGIFRCNG 3435


>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
            lipoprotein-related protein 1 variant protein.
          Length = 2359

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 236  LCLSTYFLCSHSNHC-NGISMCNG 168
            +CL + F C+++N C  GI  CNG
Sbjct: 1228 VCLPSQFKCTNTNRCIPGIFRCNG 1251


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,909,064
Number of Sequences: 237096
Number of extensions: 707871
Number of successful extensions: 983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)