Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0434
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 204 MTAEKICAKAEFFLHPYNFNFGSYTHYIG 290
           +  EK+         P N +   YTHYIG
Sbjct: 147 VATEKMFVARHLAETPKNTSAVRYTHYIG 175


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 227 STYFLCSHSNHCNGISMC 174
           S  FLC +  HC  +  C
Sbjct: 732 SEQFLCRYEAHCFALCHC 749


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 65  HILPDWNRSPMTISIEK 115
           H+ P W   P  +S+E+
Sbjct: 703 HVPPRWIVEPTDVSVER 719


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,034
Number of Sequences: 438
Number of extensions: 1560
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)