Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0434
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33100.1 68414.m04087 MATE efflux family protein similar to r...    27   2.3  
At2g05642.1 68415.m00603 expressed protein                             27   3.1  
At1g33090.1 68414.m04085 MATE efflux family protein similar to r...    27   3.1  
At2g26370.1 68415.m03165 MD-2-related lipid recognition domain-c...    25   9.4  
At1g33080.2 68414.m04081 MATE efflux family protein similar to r...    25   9.4  
At1g33080.1 68414.m04082 MATE efflux family protein similar to r...    25   9.4  
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th...    25   9.4  

>At1g33100.1 68414.m04087 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 475

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 153 LALYSIILISELAFSMDIVIGLLFQSGSICAR-*ASDLYMVLGI 25
           LA YSI     L FS  I++G+    G++C +   +  Y +LGI
Sbjct: 70  LAAYSITFTILLRFSNGILLGMAGALGTLCGQAYGAKQYQMLGI 113


>At2g05642.1 68415.m00603 expressed protein
          Length = 394

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 246 HPYNFNFGSYTHYIG 290
           HPY  NF S TH IG
Sbjct: 95  HPYKINFMSMTHIIG 109


>At1g33090.1 68414.m04085 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 494

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 153 LALYSIILISELAFSMDIVIGLLFQSGSICAR-*ASDLYMVLGI 25
           LA YSI     L FS  I++G+    G++C +   +  Y +LGI
Sbjct: 73  LAAYSITFTVLLRFSNGILLGMASALGTLCGQAYGAKQYHMLGI 116


>At2g26370.1 68415.m03165 MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           contains Pfam profile PF02221: ML domain
          Length = 173

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 98  TISIEKASSLIRIILYKAKCHVLYHY 175
           TI+I   +S    I+Y+A  HVLY Y
Sbjct: 63  TITISGFTSDDSYIIYRATIHVLYKY 88


>At1g33080.2 68414.m04081 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 490

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 153 LALYSIILISELAFSMDIVIGLLFQSGSICAR-*ASDLYMVLGI 25
           LA YSI L   L FS  I++G+     ++C +   +  Y +LGI
Sbjct: 73  LAAYSITLTVLLRFSNGILLGMASALETLCGQAYGAKQYHMLGI 116


>At1g33080.1 68414.m04082 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 494

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 153 LALYSIILISELAFSMDIVIGLLFQSGSICAR-*ASDLYMVLGI 25
           LA YSI L   L FS  I++G+     ++C +   +  Y +LGI
Sbjct: 73  LAAYSITLTVLLRFSNGILLGMASALETLCGQAYGAKQYHMLGI 116


>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
           threonine--tRNA ligase, putative similar to SP|O04630
           Threonyl-tRNA synthetase, mitochondrial precursor (EC
           6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
           thaliana}; contains Pfam profiles PF00587: tRNA
           synthetase class II core domain (G, H, P, S and T),
           PF03129: Anticodon binding domain, PF02824: TGS domain
          Length = 458

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 80  WNRSPMTISIEKASSLIRIILYKAKCHVLY 169
           W  SPM I+++ +  L +  L  +  HVL+
Sbjct: 59  WETSPMDIAVQISKGLAKSALVSSVNHVLW 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,883,188
Number of Sequences: 28952
Number of extensions: 96962
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)