Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0433
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 166 2e-42
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 78 8e-16
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 77 2e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 1e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 58 7e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 6e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 5e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 7e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 41 1e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 29 0.67
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.7
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 6.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 166 bits (403), Expect = 2e-42
Identities = 79/103 (76%), Positives = 86/103 (83%)
Frame = -3
Query: 567 GIPETTYNFHHEVQREHP*GLYANPVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 388
GI E TYN + + LY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+AP
Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAP 332
Query: 387 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHSKCF 259
PERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+ KCF
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 78.2 bits (184), Expect = 8e-16
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Frame = -3
Query: 576 RPCGIPETTYNFHHEVQREHP*GLYANPVLSGGTTMYPGIADRMQKEITALAPSTMKIKI 397
R GIP+ N E + L N ++ GGT++ G + R+Q E++ L P + ++KI
Sbjct: 323 RILGIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKI 381
Query: 396 IAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHSKC 262
A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ +C
Sbjct: 382 HASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 77.0 bits (181), Expect = 2e-15
Identities = 34/70 (48%), Positives = 51/70 (72%)
Frame = -3
Query: 507 LYANPVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 328
LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 327 QQMWISKQEY 298
+++ I+ +EY
Sbjct: 358 RRLLITSEEY 367
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.3 bits (167), Expect = 1e-13
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = -3
Query: 507 LYANPVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 334
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 333 TFQQMWISKQEYDESG 286
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.4 bits (135), Expect = 7e-10
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = -3
Query: 507 LYANPVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 361
LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 360 GGSILAS-LSTFQQMWISKQEYDESG 286
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.8 bits (111), Expect = 6e-07
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Frame = -3
Query: 510 GLYANPVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 373
GLY N VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 372 SVWIGGSILASLSTFQQMWISKQEYDESGPSI 277
+VW GGS+LA F +K +Y+E G SI
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASI 416
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 45.6 bits (103), Expect = 5e-06
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -3
Query: 507 LYANPVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 328
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 327 QQMWISKQEYDESGPSIV 274
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.2 bits (102), Expect = 7e-06
Identities = 29/104 (27%), Positives = 44/104 (42%)
Frame = -3
Query: 576 RPCGIPETTYNFHHEVQREHP*GLYANPVLSGGTTMYPGIADRMQKEITALAPSTMKIKI 397
R GIPE L N V GG +PG R+ E+ +LAP+ ++K+
Sbjct: 296 REAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKV 355
Query: 396 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHSK 265
P + W S + L + I++ EY E G +I+ K
Sbjct: 356 FEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -3
Query: 507 LYANPVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 337
LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588
Query: 336 STFQQMWISKQEYDESGPSIVHSK 265
++WI ++ G ++ K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 28.7 bits (61), Expect = 0.67
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = -3
Query: 366 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHSK 265
++GGSI+A S + + +++ +EY + GP+ +H+K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 374 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 279
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 441 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 331
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 484 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 305
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 304 GV 299
V
Sbjct: 534 AV 535
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 307 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 393
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,439
Number of Sequences: 5004
Number of extensions: 42256
Number of successful extensions: 131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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