Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0432
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   0.72 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    20   8.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   8.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    20   8.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 0.72
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 129 PGPPSYPQGVRNRTYSA 79
           PGPPS+P  V +  YS+
Sbjct: 121 PGPPSHPYTVISNGYSS 137


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
          protein.
          Length = 136

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 96 NRTYSARA*ETAHTTGHAG 40
          N+++S  A  TAH   H+G
Sbjct: 28 NKSFSQAANLTAHVRTHSG 46


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 96  NRTYSARA*ETAHTTGHAG 40
           N+++S  A  TAH   H+G
Sbjct: 284 NKSFSQAANLTAHVRTHSG 302


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 40  KRRAITISLLTG 5
           +RRA+ ISL TG
Sbjct: 223 RRRAVEISLTTG 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,893
Number of Sequences: 336
Number of extensions: 2291
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)