Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0432
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   2.2  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   5.0  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   5.0  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   5.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.7  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    24   8.8  

>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 138 NWVPGPPSYPQGVRNRTYSARA*ETAHTTGHAGSG 34
           NW  GPP   +  ++  Y   A +T    GHA  G
Sbjct: 4   NWFEGPPCSVRNCKSTWYFKNAGQTFCRRGHAQHG 38


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 200 KPWRYPT*SPCSTSPFRQRRNSEEARTDRPS 292
           +P + PT  P S  PF Q   +    T RPS
Sbjct: 220 QPVKQPTEQPGSLHPFMQESKTSPFATRRPS 250


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 203 PWRYPT*SPCSTSPFRQRRNSEEARTDRPSQQLRSLNGE 319
           P+R+PT  P    P  + ++S  +R    S QL  L+ E
Sbjct: 307 PFRHPTSKPLPPKPLSRSKSSSLSRNQTRS-QLNDLSAE 344


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +3

Query: 27  IARRFQR--DRWCARFLTPVLNT 89
           + RR QR  DRWC R  +P  N+
Sbjct: 162 LVRRGQREFDRWCVRRFSPASNS 184


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 180 KRRPVNCNTTHYRANWVPGPPSY 112
           + +P   N  H  +  VPGPP++
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPAF 908


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 183 VKRRPVNCNTTHYRANWVPGPPSYPQGVRNRT 88
           VK  P++    +  A     PP+YP+GV   T
Sbjct: 92  VKTDPLSLPIQNVPARLPENPPAYPKGVLGNT 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,523
Number of Sequences: 5004
Number of extensions: 36157
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)