Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0432
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0036 + 3217163-3217584,3217752-3218322 30 0.71
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178... 30 0.94
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 29 2.2
05_05_0389 + 24590331-24590529,24591068-24591392,24591519-245916... 27 5.0
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 5.0
01_06_1736 + 39556376-39556523,39556651-39556745,39556867-395570... 27 5.0
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371 27 6.6
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 27 6.6
01_06_0925 - 33067106-33067280,33069193-33069517,33070757-330707... 27 6.6
11_06_0716 - 26562084-26562230,26562874-26562983,26563166-26563268 27 8.7
06_03_0415 + 20558333-20558635,20558894-20558917 27 8.7
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110... 27 8.7
01_05_0693 - 24339917-24340524,24340778-24341252 27 8.7
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 0.71
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 157 ITIHWPSFYNVV-TGKTLALPNLIALQH 237
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>10_08_0793 -
20614583-20614897,20615417-20615660,20617713-20617899,
20618508-20618547,20618699-20618775,20618965-20619091
Length = 329
Score = 29.9 bits (64), Expect = 0.94
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 164 IVIRLTIGRIGYRAPPRTRKEYETVRIQHGRKKPRTPPVTLEAARDND 21
+V+ T R G R + E I+HGRK RT E RD D
Sbjct: 212 LVVMATTTRRGSREEHKATPPPENGAIRHGRKARRTTAAAEEEERDGD 259
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 289 RAIGAGLFAITPLAKGGCAARRLSWVTPGFSQSRR 185
RA GAGL A+ P A+GG RR +W G + R
Sbjct: 144 RAAGAGLQAVVPEARGG--ERRRAWRRRGLVATLR 176
>05_05_0389 +
24590331-24590529,24591068-24591392,24591519-24591617,
24591861-24592006,24592519-24592574
Length = 274
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 308 GCATVGKGDRCGPLRYYAAGERGMCC 231
GC + GD G LR +A+GE + C
Sbjct: 33 GCTSARYGDAVGRLRLFASGELQVSC 58
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 169 WPSFYNVV-TGKTLALPNLIALQH 237
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
>01_06_1736 +
39556376-39556523,39556651-39556745,39556867-39557059,
39557468-39557808,39558213-39558443,39558537-39558689
Length = 386
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 24 VIARRFQRDRWCARFLTPVLNTYGFVLLAG 113
V R+ W +F+T +L GF+LL G
Sbjct: 48 VFGRKMYYITWFLQFITLILGNMGFILLGG 77
>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
Length = 680
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 169 WPSFYNVV-TGKTLALPNLIALQH 237
W F N+V +G TL+LP + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 122 PPRTRKEYETVRIQHGRKKPRTPPVTLEAAR 30
PPR R+ + TVR + P PP +A +
Sbjct: 47 PPRPRRAFGTVRSSNAHDAPEKPPPLQKAPK 77
>01_06_0925 -
33067106-33067280,33069193-33069517,33070757-33070795,
33071188-33071395
Length = 248
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 308 GCATVGKGDRCGPLRYYAAGERGMCCK 228
GC + GD G LR YA+G+ + C+
Sbjct: 36 GCTSHRYGDAVGRLRVYASGDLEVSCE 62
>11_06_0716 - 26562084-26562230,26562874-26562983,26563166-26563268
Length = 119
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 278 TDRPSQQLRSLNGEWQIVSVNILLKFALNFC 370
T+ P+ + + NG+WQ V+V I +F +N C
Sbjct: 77 TESPAFKHYNYNGQWQTVTVRINSRF-INAC 106
>06_03_0415 + 20558333-20558635,20558894-20558917
Length = 108
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 70 RNRAHHRSRWKRR 32
R R HHR RWKR+
Sbjct: 88 RRRHHHRRRWKRK 100
>03_05_0941 +
29008322-29009686,29009929-29010012,29010889-29011052,
29011208-29011233,29011494-29011583,29012135-29012229,
29012328-29012495
Length = 663
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +1
Query: 184 NVVTGKTLALPNLIALQHI 240
N +TG+ +ALP++I ++H+
Sbjct: 171 NPITGEQIALPSVITIEHV 189
>01_05_0693 - 24339917-24340524,24340778-24341252
Length = 360
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 153 THYRANWVPGPPSYPQGVR--NRTYSARA*ET 64
TH +W P PPS+ G R N T +A A +T
Sbjct: 104 THLGYSWAPPPPSHRHGHRAENGTAAAAADDT 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,856,983
Number of Sequences: 37544
Number of extensions: 284248
Number of successful extensions: 856
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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