Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0432
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   1.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.0  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -1

Query: 287 GDRCGPLRYYAAGERGMCCKAIKLGNARVFPVTTL*NDGQ*IVIRLTIGRIGYRAPPRTR 108
           G +  P+R     E G      KLG  R+  V T   + +   +RL  G   + +   TR
Sbjct: 15  GGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTR 74

Query: 107 K 105
           K
Sbjct: 75  K 75


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 195 SHDVVKRRPVNCNTTHYRANWVPGP 121
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -3

Query: 165 NCNTTHYRANWVPGPPSYPQGVRNRTYSARA*ETAHTTGHAG 40
           N   +H R++   G   Y   +  +T++  A  T H   H G
Sbjct: 75  NLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTG 116


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 77  RAEYVRFRTPCGYEG 121
           RAE++ F  P  Y+G
Sbjct: 529 RAEFIEFSKPFKYQG 543


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 113 TRKEYETVRIQHGRKKPRTPPVTLEAARDND 21
           T  E++T+RI   R   ++PP       D+D
Sbjct: 176 TYDEFDTIRIPIVRSLSKSPPNDEGIETDSD 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,170
Number of Sequences: 438
Number of extensions: 2645
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)