Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0432
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14000.2 68416.m01768 expressed protein                             27   4.1  
At3g14000.1 68416.m01767 expressed protein                             27   4.1  
At5g54810.1 68418.m06827 tryptophan synthase, beta subunit 1 (TS...    27   5.5  
At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TS...    27   5.5  
At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4) ident...    27   7.2  
At1g19860.1 68414.m02491 zinc finger (CCCH-type) family protein ...    27   7.2  
At5g37630.1 68418.m04532 chromosome condensation family protein ...    26   9.5  
At5g24390.1 68418.m02875 RabGAP/TBC domain-containing protein si...    26   9.5  
At2g27950.1 68415.m03388 expressed protein                             26   9.5  

>At3g14000.2 68416.m01768 expressed protein
          Length = 374

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 122 PPRTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFA 15
           P   R E  + RIQ  +  P TPP+  E +R   +A
Sbjct: 210 PTPPRSEDGSSRIQSTKNGPATPPLNKECSRGKGYA 245


>At3g14000.1 68416.m01767 expressed protein
          Length = 374

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 122 PPRTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFA 15
           P   R E  + RIQ  +  P TPP+  E +R   +A
Sbjct: 210 PTPPRSEDGSSRIQSTKNGPATPPLNKECSRGKGYA 245


>At5g54810.1 68418.m06827 tryptophan synthase, beta subunit 1 (TSB1)
           identical to SP|P14671
          Length = 470

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 165 NCNTTHYRANWVPGPPSYPQGVRN 94
           N  TTHY    V GP  YP  VR+
Sbjct: 258 NVETTHYILGSVAGPHPYPMMVRD 281


>At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TSB2)
           identical to SP|25269
          Length = 475

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 165 NCNTTHYRANWVPGPPSYPQGVRN 94
           N  TTHY    V GP  YP  VR+
Sbjct: 263 NVETTHYILGSVAGPHPYPMMVRD 286


>At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4)
           identical to SP|Q8GYN5 RPM1-interacting protein 4
           {Arabidopsis thaliana}
          Length = 211

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 124 PPLVPARSTKPYVFSTGVRNRAHHRSR 44
           PP  P+  TKP    T  R+R H RSR
Sbjct: 54  PPHPPSSRTKPEQVDTVRRSREHMRSR 80


>At1g19860.1 68414.m02491 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 413

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 131 YRAPP-RTRKEYETVRIQHGRKKPRTPPV 48
           Y APP R    Y+ +  QHG  +  TPPV
Sbjct: 295 YGAPPARDASYYKNLIQQHGGDRQETPPV 323


>At5g37630.1 68418.m04532 chromosome condensation family protein
            contains pfam profile: PF04154 chromosome condensation
            protein 3, C-terminal region
          Length = 1051

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 218  T*SPCSTSPFRQRRNSEEARTDRPSQQLRS 307
            T +PCST P R RR +    T    +++ S
Sbjct: 967  TPAPCSTKPARSRRRARIEETSSDEEEVAS 996


>At5g24390.1 68418.m02875 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 528

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 315 PFRLRNCWEGRSVRASSLLRRWRK 244
           P RL++ W  R  +    LRRWR+
Sbjct: 47  PHRLKSPWSRRKGKKPLTLRRWRR 70


>At2g27950.1 68415.m03388 expressed protein 
          Length = 767

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
 Frame = -3

Query: 291 EGRS-VRASSLLRRWRK 244
           EGRS VRASSLL+ WR+
Sbjct: 31  EGRSSVRASSLLQMWRE 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,781,726
Number of Sequences: 28952
Number of extensions: 202888
Number of successful extensions: 477
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)